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BaseInfo

ncRNA ID osa-miR396d
Species Oryza sativa
Class miRNA
Genome position Chr4:30320096-30320216 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 91 - UCCACAGGCUUUCUUGAACGG - 111
Stem-loop(if miRNA) --UACA    G G    U       -G         A    --GG  G  GG   -  UG  G
      GCGA U GUUC GGAAGGC  GUGGAGGUG CGGC    CG CC  CGC CG  GC G
      |||| | |||| |||||||  ||||||||| ||||    || ||  ||| ||  || G
      CGUU G CAAG UCUUUCG  CACCUUCGC GUCG    GC GG  GUG GC  CG G
CGCCGG    - G    U       GA         -    AGCA  G  GG   A  GU  G
Stem-loop sequence UACAGCGAGUGGUUCUGGAAGGCGGUGGAGGUGACGGCGGCGGCCGGCGCCGUGGCGGGGGGCUGCGAGUGGGGGGCGACGAGCUGCGCUUCCACAGGCUUUCUUGAACGGUUGCGGCCGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK108170.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:629   CCGUUCAAGAAAGCCUGUGGA   649

0.0 Oryza sativa Japonica Group cDNA clone:002-139-H11, full insert sequence NA coding protein psRNATarget
FJ546694.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:624   CCGUUCAAGAAAGCCUGUGGA   644

0.0 Oryza sativa Indica Group cultivar IR58 growth-regulating factor 10 (GRF10) mRNA, complete cds NA coding protein psRNATarget
CT834761.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:625   CCGUUCAAGAAAGCCUGUGGA   645

0.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA033I10, full insert sequence NA coding protein psRNATarget
XM_015769446.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:645   CCGUUCAAGAAAGCCUGUGGA   665

0.0 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 10 (LOC4330314), transcript variant X2, mRNA growth-regulating factor 10(LOC4330314) coding protein psRNATarget
XM_015769445.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:651   CCGUUCAAGAAAGCCUGUGGA   671

0.0 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 10 (LOC4330314), transcript variant X1, mRNA growth-regulating factor 10(LOC4330314) coding protein psRNATarget
XM_015786282.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:417   CCGUUCAAGAAAGCCUGUGGA   437

0.0 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 2 (LOC107276671), mRNA growth-regulating factor 2(LOC107276671) coding protein psRNATarget
CT836198.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:423   CCGUUCAAGAAAGCCUGUGGA   443

0.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA059E01, full insert sequence NA coding protein psRNATarget
XM_015786118.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:619   CCGUUCAAGAAAGCCUGUGGA   639

0.0 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 5 (LOC4339928), transcript variant X3, mRNA growth-regulating factor 5(LOC4339928) coding protein psRNATarget
XM_015786116.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:619   CCGUUCAAGAAAGCCUGUGGA   639

0.0 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 5 (LOC4339928), transcript variant X1, mRNA growth-regulating factor 5(LOC4339928) coding protein psRNATarget
AK241439.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:406   CCGUUCAAGAAAGCCUGUGGA   426

0.0 Oryza sativa Japonica Group cDNA, clone: J065162G19, full insert sequence NA coding protein psRNATarget
XM_015778847.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:711   CCGUUCAAGAAAGCCUGUGGA   731

0.0 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 3 (LOC4336879), transcript variant X2, mRNA growth-regulating factor 3(LOC4336879) coding protein psRNATarget
FJ546693.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:496   CCGUUCAAGAAAGCCUGUGGA   516

0.0 Oryza sativa Indica Group cultivar IR58 growth-regulating factor 3 (GRF3) mRNA, complete cds NA coding protein psRNATarget
AK063983.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:570   CCGUUCAAGAAAGCCUGUGGA   590

0.0 Oryza sativa Japonica Group cDNA clone:001-124-D07, full insert sequence NA coding protein psRNATarget
AK103508.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:606   CCGUUCAAGAAAGCCUGUGGA   626

0.0 Oryza sativa Japonica Group cDNA clone:J033131E19, full insert sequence NA coding protein psRNATarget
AK058659.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:732   CCGUUCAAGAAAGCCUGUGGA   752

0.0 Oryza sativa Japonica Group cDNA clone:001-018-F11, full insert sequence NA coding protein psRNATarget
XM_015768811.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:570   CCGUUCAAGAAAGCCUGUGGA   590

0.0 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 4 (LOC4330436), mRNA growth-regulating factor 4(LOC4330436) coding protein psRNATarget
XM_015786117.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:619   CCGUUCAAGAAAGCCUGUGGA   639

0.0 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 5 (LOC4339928), transcript variant X2, mRNA growth-regulating factor 5(LOC4339928) coding protein psRNATarget
XM_015786119.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:619   CCGUUCAAGAAAGCCUGUGGA   639

0.0 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 5 (LOC4339928), transcript variant X4, mRNA growth-regulating factor 5(LOC4339928) coding protein psRNATarget
XM_015778846.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:710   CCGUUCAAGAAAGCCUGUGGA   730

0.0 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 3 (LOC4336879), transcript variant X1, mRNA growth-regulating factor 3(LOC4336879) coding protein psRNATarget
XM_015778848.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:709   CCGUUCAAGAAAGCCUGUGGA   729

0.0 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 3 (LOC4336879), transcript variant X3, mRNA growth-regulating factor 3(LOC4336879) coding protein psRNATarget
XM_015772434.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:731   CCGUUCAAGAAAGCCUGUGGA   751

0.0 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 9 (LOC4333705), mRNA growth-regulating factor 9(LOC4333705) coding protein psRNATarget
XM_015768635.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:569   CCGUUCAAGAAAGCCUGUGGA   589

0.0 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 1 (LOC4330903), mRNA growth-regulating factor 1(LOC4330903) coding protein psRNATarget
AF201895.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  |||||||||||||||||||||
targets:570   CCGUUCAAGAAAGCCUGUGGA   590

0.0 Oryza sativa growth-regulating factor 1 (GRF1) mRNA, complete cds NA coding protein psRNATarget
XM_015779290.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  ||*||||||||||||||||||
targets:81   CCUUUCAAGAAAGCCUGUGGA   101

1.0 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 2-like (LOC107280619), mRNA growth-regulating factor 2-like(LOC107280619) coding protein psRNATarget
XM_015779873.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  ||||||||||||||||*||||
targets:858   CCGUUCAAGAAAGCCUAUGGA   878

1.5 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 12 (LOC4336731), mRNA growth-regulating factor 12(LOC4336731) coding protein psRNATarget
AK110934.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  ||||||||||||||||*||||
targets:858   CCGUUCAAGAAAGCCUAUGGA   878

1.5 Oryza sativa Japonica Group cDNA clone:002-173-G02, full insert sequence NA coding protein psRNATarget
AK241557.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  ||||||||||||||*||||||
targets:732   CCGUUCAAGAAAGCAUGUGGA   752

1.5 Oryza sativa Japonica Group cDNA, clone: J065178H17, full insert sequence NA coding protein psRNATarget
AK073578.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  ||||||||||||||*||||||
targets:420   CCGUUCAAGAAAGCAUGUGGA   440

1.5 Oryza sativa Japonica Group cDNA clone:J033048N01, full insert sequence NA coding protein psRNATarget
XM_015763499.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  ||||||||||||||*||||||
targets:761   CCGUUCAAGAAAGCAUGUGGA   781

1.5 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 7 (LOC9268363), transcript variant X2, mRNA growth-regulating factor 7(LOC9268363) coding protein psRNATarget
XM_015763498.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  ||||||||||||||*||||||
targets:818   CCGUUCAAGAAAGCAUGUGGA   838

1.5 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 7 (LOC9268363), transcript variant X1, mRNA growth-regulating factor 7(LOC9268363) coding protein psRNATarget
XM_015773144.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  ||||||||||||||*||||||
targets:777   CCGUUCAAGAAAGCAUGUGGA   797

1.5 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 6 (LOC4333990), mRNA growth-regulating factor 6(LOC4333990) coding protein psRNATarget
XM_015760217.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  =|||||||||||||*||||||
targets:863   UCGUUCAAGAAAGCAUGUGGA   883

1.5 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 8 (LOC4350711), mRNA growth-regulating factor 8(LOC4350711) coding protein psRNATarget
AK103055.1
ncRNA:21   GGCAAGUUCUUUCGGACACCU   1
  =|||||||||||||*||||||
targets:1321   UCGUUCAAGAAAGCAUGUGGA   1341

1.5 Oryza sativa Japonica Group cDNA clone:J033117J15, full insert sequence NA coding protein psRNATarget

Reference

1 PMID:19903869
"Rice MicroRNA effector complexes and targets";
Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
Plant Cell. 21:3421-3435(2009).
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