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BaseInfo

ncRNA ID osa-miR6249b
Species Oryza sativa
Class miRNA
Genome position Chr4:30286459-30286540 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - CGUGAAGAGCUCGCCGGCGGC - 31
Stem-loop(if miRNA) -   -  -   -  C UG A -   -   - -      CCA   CC
 CCA UC CCG CG G  A G AGC UCG C CGGCGG   UGG  A
 ||| || ||| || |  | | ||| ||| | ||||||   |||
 GGU AG GGC GC C  U C UCG AGC G GCCGCC   ACC  U
G   U  C   A  - GU C G   U   C C      ---   UC
Stem-loop sequence CCAUCCCGCGCGUGAAGAGCUCGCCGGCGGCCAUGGCCAUCUCCACCGCCGCGCCGAUGCUGCCUUGCCGACGGCGAUUGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015785011.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  |||||||||||||||||||||
targets:708   GCCGCCGGCGAGCUCUUCACG   728

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271180 (LOC9271180), transcript variant X6, mRNA uncharacterized LOC9271180(LOC9271180) coding protein psRNATarget
XM_015785015.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  |||||||||||||||||||||
targets:710   GCCGCCGGCGAGCUCUUCACG   730

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271180 (LOC9271180), transcript variant X9, mRNA uncharacterized LOC9271180(LOC9271180) coding protein psRNATarget
XM_015785010.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  |||||||||||||||||||||
targets:708   GCCGCCGGCGAGCUCUUCACG   728

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271180 (LOC9271180), transcript variant X5, mRNA uncharacterized LOC9271180(LOC9271180) coding protein psRNATarget
XM_015785012.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  |||||||||||||||||||||
targets:708   GCCGCCGGCGAGCUCUUCACG   728

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271180 (LOC9271180), transcript variant X7, mRNA uncharacterized LOC9271180(LOC9271180) coding protein psRNATarget
XM_015785007.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  |||||||||||||||||||||
targets:410   GCCGCCGGCGAGCUCUUCACG   430

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271180 (LOC9271180), transcript variant X2, mRNA uncharacterized LOC9271180(LOC9271180) coding protein psRNATarget
XM_015785009.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  |||||||||||||||||||||
targets:710   GCCGCCGGCGAGCUCUUCACG   730

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271180 (LOC9271180), transcript variant X4, mRNA uncharacterized LOC9271180(LOC9271180) coding protein psRNATarget
XM_015785016.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  |||||||||||||||||||||
targets:710   GCCGCCGGCGAGCUCUUCACG   730

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271180 (LOC9271180), transcript variant X10, mRNA uncharacterized LOC9271180(LOC9271180) coding protein psRNATarget
XM_015785008.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  |||||||||||||||||||||
targets:410   GCCGCCGGCGAGCUCUUCACG   430

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271180 (LOC9271180), transcript variant X3, mRNA uncharacterized LOC9271180(LOC9271180) coding protein psRNATarget
XM_015785006.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  |||||||||||||||||||||
targets:410   GCCGCCGGCGAGCUCUUCACG   430

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271180 (LOC9271180), transcript variant X1, mRNA uncharacterized LOC9271180(LOC9271180) coding protein psRNATarget
XM_015785014.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  |||||||||||||||||||||
targets:410   GCCGCCGGCGAGCUCUUCACG   430

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271180 (LOC9271180), transcript variant X8, mRNA uncharacterized LOC9271180(LOC9271180) coding protein psRNATarget
AK103785.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  ||||||||||||||||||||*
targets:67   GCCGCCGGCGAGCUCUUCACC   87

1.0 Oryza sativa Japonica Group cDNA clone:J033145I11, full insert sequence NA coding protein psRNATarget
XM_015790372.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  |=|*||||||||||||||=||
targets:1099   GUCACCGGCGAGCUCUUCGCG   1119

2.5 PREDICTED: Oryza sativa Japonica Group 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic (LOC4342424), mRNA 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic(LOC4342424) coding protein psRNATarget
XM_015771176.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  |=|*||||||||||||||=||
targets:1103   GUCACCGGCGAGCUCUUCGCG   1123

2.5 PREDICTED: Oryza sativa Japonica Group zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplastic (LOC4330451), mRNA zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplastic(LOC4330451) coding protein psRNATarget
AK119780.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  |=|*||||||||||||||=||
targets:954   GUCACCGGCGAGCUCUUCGCG   974

2.5 Oryza sativa Japonica Group cDNA clone:002-173-D12, full insert sequence NA coding protein psRNATarget
AY838897.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  |=|*||||||||||||||=||
targets:1109   GUCACCGGCGAGCUCUUCGCG   1129

2.5 Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid dioxygenase 1 (NCED1) mRNA, complete cds NA coding protein psRNATarget
AK064824.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  |=|*||||||||||||||=||
targets:1027   GUCACCGGCGAGCUCUUCGCG   1047

2.5 Oryza sativa Japonica Group cDNA clone:J013000F03, full insert sequence NA coding protein psRNATarget
AK099580.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  |=|*||||||||||||||=||
targets:1027   GUCACCGGCGAGCUCUUCGCG   1047

2.5 Oryza sativa Japonica Group cDNA clone:J013040C20, full insert sequence NA coding protein psRNATarget
AY838900.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  |=|*||||||||||||||=||
targets:935   GUCACCGGCGAGCUCUUCGCG   955

2.5 Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid dioxygenase 4 (NCED4) mRNA, complete cds NA coding protein psRNATarget
KX013221.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  |=|*||||||||||||||=||
targets:1009   GUCACCGGCGAGCUCUUCGCG   1029

2.5 Oryza sativa Indica Group cultivar Nagina 22 chloroplast 9-cis-epoxycarotenoid dioxygenase 1 mRNA, complete cds; nuclear gene for chloroplast product NA coding protein psRNATarget
AK067664.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  *||||||||||*||||||||*
targets:201   ACCGCCGGCGACCUCUUCACC   221

2.5 Oryza sativa Japonica Group cDNA clone:J013117H24, full insert sequence NA coding protein psRNATarget
XM_015761205.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  *||||||||||*||||||||*
targets:200   ACCGCCGGCGACCUCUUCACC   220

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350543 (LOC4350543), mRNA uncharacterized LOC4350543(LOC4350543) coding protein psRNATarget
AK104957.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  *||||||||||*||||||||*
targets:124   ACCGCCGGCGACCUCUUCACC   144

2.5 Oryza sativa Japonica Group cDNA clone:001-114-B05, full insert sequence NA coding protein psRNATarget
XM_015767431.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  *=|||||*|||||||||||=|
targets:373   AUCGCCGACGAGCUCUUCAUG   393

2.5 PREDICTED: Oryza sativa Japonica Group UV-stimulated scaffold protein A homolog (LOC4329068), transcript variant X1, mRNA UV-stimulated scaffold protein A homolog(LOC4329068) coding protein psRNATarget
AK103308.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  *=|||||*|||||||||||=|
targets:380   AUCGCCGACGAGCUCUUCAUG   400

2.5 Oryza sativa Japonica Group cDNA clone:J033125F08, full insert sequence NA coding protein psRNATarget
XM_015767432.1
ncRNA:21   CGGCGGCCGCUCGAGAAGUGC   1
  *=|||||*|||||||||||=|
targets:141   AUCGCCGACGAGCUCUUCAUG   161

2.5 PREDICTED: Oryza sativa Japonica Group UV-stimulated scaffold protein A homolog (LOC4329068), transcript variant X2, mRNA UV-stimulated scaffold protein A homolog(LOC4329068) coding protein psRNATarget

Reference

1 PMID:22585409
"Novel miRNAs in the control of arsenite levels in rice";
Liu Q;
Funct Integr Genomics. 12:649-658(2012).
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