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BaseInfo

ncRNA ID	novel_zma_miR1175
Species	Zea mays
Class	miRNA
Genome position	Chr6:159006806-159006870 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089707
Length	23
Mature sequence(if miRNA)	1 - GUUUUUUUUAUUAGUCGCUGGAU - 23
Stem-loop(if miRNA)	---G                            A     UUUUUUUUAUUAGUCGCUGGAUAGUGCA A     ||||||||||||||||||||||||||||     AAGAAAAAUAAUCAGCGACCUAUCACGU A GGCA                            U
Stem-loop sequence	GUUUUUUUUAUUAGUCGCUGGAUAGUGCAAAAUUGCACUAUCCAGCGACUAAUAAAAAGAAACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166321.1	ncRNA:23   UAGGUCGCUGAUUAUUUUUUUUG   1   ||||||||||||||||||||||* targets:55   AUCCAGCGACUAAUAAAAAAAAA   77 Target Full Sequence	1.0	Sequence 3985 from Patent EP2559767	NA	coding protein	psRNATarget
HI405860.1	ncRNA:23   UAGGUCGCUGAUUAUUUUUUUUG   1   ||||||||||||||||||||||* targets:55   AUCCAGCGACUAAUAAAAAAAAA   77 Target Full Sequence	1.0	Sequence 3985 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237990.1	ncRNA:23   UAGGUCGCUGAUUAUUUUUUUUG   1   ||||||||||||||||||||||* targets:55   AUCCAGCGACUAAUAAAAAAAAA   77 Target Full Sequence	1.0	Sequence 3985 from Patent EP2985353	NA	coding protein	psRNATarget
LQ237958.1	ncRNA:23   UAGGUCGCUGAUUAUUUUUUUUG   1   ||||||||||||||||||||||* targets:50   AUCCAGCGACUAAUAAAAAAAAA   72 Target Full Sequence	1.0	Sequence 3953 from Patent EP2985353	NA	coding protein	psRNATarget
HI405828.1	ncRNA:23   UAGGUCGCUGAUUAUUUUUUUUG   1   ||||||||||||||||||||||* targets:50   AUCCAGCGACUAAUAAAAAAAAA   72 Target Full Sequence	1.0	Sequence 3953 from Patent EP2074227	NA	coding protein	psRNATarget
JB166289.1	ncRNA:23   UAGGUCGCUGAUUAUUUUUUUUG   1   ||||||||||||||||||||||* targets:50   AUCCAGCGACUAAUAAAAAAAAA   72 Target Full Sequence	1.0	Sequence 3953 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008664460.2	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:163   AUCCAGCGACUAAUAAAAAGAAAC   186 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC103641061), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658752.2	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:2092   AUCCAGCGACUAAUAAAAAGAAAC   2115 Target Full Sequence	3.0	PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542418.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:2025   AUCCAGCGACUAAUAAAAAGAAAC   2048 Target Full Sequence	3.0	PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008675770.2	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:1858   AUCCAGCGACUAAUAAAAAGAAAC   1881 Target Full Sequence	3.0	PREDICTED: Zea mays pectinesterase-like (LOC103650113), mRNA	NA	coding protein	psRNATarget
XM_008656936.2	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:214   AUCCAGCGACUAAUAAAAAGAAAC   237 Target Full Sequence	3.0	PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381500), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669400.2	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:1650   AUCCAGCGACUAAUAAAAAGAAAC   1673 Target Full Sequence	3.0	PREDICTED: Zea mays Pentatricopeptide repeat-containing protein PNM1 mitochondrial (LOC100274849), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU970288.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:1373   AUCCAGCGACUAAUAAAAAGAAAC   1396 Target Full Sequence	3.0	Zea mays clone 343094 metal tolerance protein C3 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008675381.2	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:1265   AUCCAGCGACUAAUAAAAAGAAAC   1288 Target Full Sequence	3.0	PREDICTED: Zea mays probable WRKY transcription factor 48 (LOC103649650), mRNA	NA	coding protein	psRNATarget
BT070166.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:814   AUCCAGCGACUAAUAAAAAGAAAC   837 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0141C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001328133.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:814   AUCCAGCGACUAAUAAAAAGAAAC   837 Target Full Sequence	3.0	Zea mays Methionyl-tRNA synthetase (LOC100384454), mRNA	NA	coding protein	psRNATarget
XM_008664463.2	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:143   AUCCAGCGACUAAUAAAAAGAAAC   166 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC103641061), transcript variant X3, mRNA	NA	coding protein	psRNATarget
LQ237954.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:50   AUCCAGCGACUAAUAAAAAGAAAC   73 Target Full Sequence	3.0	Sequence 3949 from Patent EP2985353	NA	coding protein	psRNATarget
HI405824.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:50   AUCCAGCGACUAAUAAAAAGAAAC   73 Target Full Sequence	3.0	Sequence 3949 from Patent EP2074227	NA	coding protein	psRNATarget
JB166285.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:50   AUCCAGCGACUAAUAAAAAGAAAC   73 Target Full Sequence	3.0	Sequence 3949 from Patent EP2559767	NA	coding protein	psRNATarget
JB166303.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:47   AUCCAGCGACUAAUAAAAAGAAAC   70 Target Full Sequence	3.0	Sequence 3967 from Patent EP2559767	NA	coding protein	psRNATarget
HI405842.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:47   AUCCAGCGACUAAUAAAAAGAAAC   70 Target Full Sequence	3.0	Sequence 3967 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237972.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:47   AUCCAGCGACUAAUAAAAAGAAAC   70 Target Full Sequence	3.0	Sequence 3967 from Patent EP2985353	NA	coding protein	psRNATarget
JB163835.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:45   AUCCAGCGACUAAUAAAAAGAAAC   68 Target Full Sequence	3.0	Sequence 1499 from Patent EP2559767	NA	coding protein	psRNATarget
JB163774.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:45   AUCCAGCGACUAAUAAAAAGAAAC   68 Target Full Sequence	3.0	Sequence 1438 from Patent EP2559767	NA	coding protein	psRNATarget
HI403313.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:45   AUCCAGCGACUAAUAAAAAGAAAC   68 Target Full Sequence	3.0	Sequence 1438 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235504.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:45   AUCCAGCGACUAAUAAAAAGAAAC   68 Target Full Sequence	3.0	Sequence 1499 from Patent EP2985353	NA	coding protein	psRNATarget
HI403367.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:45   AUCCAGCGACUAAUAAAAAGAAAC   68 Target Full Sequence	3.0	Sequence 1492 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235497.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:45   AUCCAGCGACUAAUAAAAAGAAAC   68 Target Full Sequence	3.0	Sequence 1492 from Patent EP2985353	NA	coding protein	psRNATarget
HI403374.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:45   AUCCAGCGACUAAUAAAAAGAAAC   68 Target Full Sequence	3.0	Sequence 1499 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235443.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:45   AUCCAGCGACUAAUAAAAAGAAAC   68 Target Full Sequence	3.0	Sequence 1438 from Patent EP2985353	NA	coding protein	psRNATarget
JB163828.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||||||||||||||||||-|||| targets:45   AUCCAGCGACUAAUAAAAAGAAAC   68 Target Full Sequence	3.0	Sequence 1492 from Patent EP2559767	NA	coding protein	psRNATarget
JB166291.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||=|||||||||||||||-|||| targets:50   AUCUAGCGACUAAUAAAAAGAAAC   73 Target Full Sequence	3.0	Sequence 3955 from Patent EP2559767	NA	coding protein	psRNATarget
HI405830.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||=|||||||||||||||-|||| targets:50   AUCUAGCGACUAAUAAAAAGAAAC   73 Target Full Sequence	3.0	Sequence 3955 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237960.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||=|||||||||||||||-|||| targets:50   AUCUAGCGACUAAUAAAAAGAAAC   73 Target Full Sequence	3.0	Sequence 3955 from Patent EP2985353	NA	coding protein	psRNATarget
JB163846.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||=|||||||||||||||-|||| targets:45   AUCUAGCGACUAAUAAAAAGAAAC   68 Target Full Sequence	3.0	Sequence 1510 from Patent EP2559767	NA	coding protein	psRNATarget
HI403385.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||=|||||||||||||||-|||| targets:45   AUCUAGCGACUAAUAAAAAGAAAC   68 Target Full Sequence	3.0	Sequence 1510 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235515.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |||=|||||||||||||||-|||| targets:45   AUCUAGCGACUAAUAAAAAGAAAC   68 Target Full Sequence	3.0	Sequence 1510 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235424.1	ncRNA:23   UAGGUCGCUGAUUAUUUUUUUUG   1   |||=||||||*|||||||||||| targets:61   AUCUAGCGACAAAUAAAAAAAAC   83 Target Full Sequence	1.5	Sequence 1419 from Patent EP2985353	NA	coding protein	psRNATarget
JB163755.1	ncRNA:23   UAGGUCGCUGAUUAUUUUUUUUG   1   |||=||||||*|||||||||||| targets:61   AUCUAGCGACAAAUAAAAAAAAC   83 Target Full Sequence	1.5	Sequence 1419 from Patent EP2559767	NA	coding protein	psRNATarget
HI403294.1	ncRNA:23   UAGGUCGCUGAUUAUUUUUUUUG   1   |||=||||||*|||||||||||| targets:61   AUCUAGCGACAAAUAAAAAAAAC   83 Target Full Sequence	1.5	Sequence 1419 from Patent EP2074227	NA	coding protein	psRNATarget
JB163800.1	ncRNA:23   UA--GGUCGCUGAUUAUUUUU-UUUG   1   ||--|||||||||||||||||-|||| targets:37   AUUCCCAGCGACUAAUAAAAAGAAAC   62 Target Full Sequence	3.0	Sequence 1464 from Patent EP2559767	NA	coding protein	psRNATarget
HI403339.1	ncRNA:23   UA--GGUCGCUGAUUAUUUUU-UUUG   1   ||--|||||||||||||||||-|||| targets:37   AUUCCCAGCGACUAAUAAAAAGAAAC   62 Target Full Sequence	3.0	Sequence 1464 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235469.1	ncRNA:23   UA--GGUCGCUGAUUAUUUUU-UUUG   1   ||--|||||||||||||||||-|||| targets:37   AUUCCCAGCGACUAAUAAAAAGAAAC   62 Target Full Sequence	3.0	Sequence 1464 from Patent EP2985353	NA	coding protein	psRNATarget
HI403365.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |*|||||||||||||||||-|||| targets:57   AGCCAGCGACUAAUAAAAAGAAAC   80 Target Full Sequence	3.0	Sequence 1490 from Patent EP2074227	NA	coding protein	psRNATarget
HI403365.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   **=||||||||||||||||-|||| targets:31   UGUCAGCGACUAAUAAAAAGAAAC   54 Target Full Sequence	3.0	Sequence 1490 from Patent EP2074227	NA	coding protein	psRNATarget
JB163826.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |*|||||||||||||||||-|||| targets:57   AGCCAGCGACUAAUAAAAAGAAAC   80 Target Full Sequence	3.0	Sequence 1490 from Patent EP2559767	NA	coding protein	psRNATarget
JB163826.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   **=||||||||||||||||-|||| targets:31   UGUCAGCGACUAAUAAAAAGAAAC   54 Target Full Sequence	3.0	Sequence 1490 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235495.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   |*|||||||||||||||||-|||| targets:57   AGCCAGCGACUAAUAAAAAGAAAC   80 Target Full Sequence	3.0	Sequence 1490 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235495.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   **=||||||||||||||||-|||| targets:31   UGUCAGCGACUAAUAAAAAGAAAC   54 Target Full Sequence	3.0	Sequence 1490 from Patent EP2985353	NA	coding protein	psRNATarget
BT024153.1	ncRNA:23   UAGGUCGCUGAUUAUUUUU-UUUG   1   ||=-|||||||||||||||-|||| targets:232   AUU-AGCGACUAAUAAAAAGAAAC   254 Target Full Sequence	3.0	Zea mays clone EL01N0438E01 mRNA sequence	NA	coding protein	psRNATarget
EZ073194.1	ncRNA:23   UA--GGUCGCUGAUUAUUUUUUUUG   1   ||--|||*=|||||||||||||||= targets:19   AUAACCAUUGACUAAUAAAAAAAAU   43 Target Full Sequence	3.0	TSA: Zea mays contig08831, mRNA sequence	NA	coding protein	psRNATarget