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BaseInfo

ncRNA ID	novel_zma_miR1170
Species	Zea mays
Class	miRNA
Genome position	Chr6:144876918-144876979 [+]
Reference genome	RefGen_v4
Source	SRR2089710
Length	24
Mature sequence(if miRNA)	39 - ACCGUCCGGUCGUCAUGCAGGGAA - 62
Stem-loop(if miRNA)	--        -   - G     C     -   C   CCCUGCGU ACG C CGGAC GUCCG GCC U   |||||||| ||| | ||||| ||||| |||   GGGACGUA UGC G GCCUG CAGGC CGG A AA        C   U -     C     G   G
Stem-loop sequence	CCCUGCGUACGCGCGGACCGUCCGGCCCUAGGGCGCGGACCGUCCGGUCGUCAUGCAGGGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968855.1	ncRNA:24   AAGGGACGUACUGCUGGCCUGCCA   1   ||||||||*|||||=||||||||| targets:757   UUCCCUGCCUGACGGCCGGACGGU   780 Target Full Sequence	2.5	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
EU957504.1	ncRNA:24   AAGGGACGUACUGCUGGCCUGCCA   1   ||=|||||*||||||||||||||| targets:1904   UUUCCUGCCUGACGACCGGACGGU   1927 Target Full Sequence	1.0	Zea mays clone 1595644 transferase mRNA, complete cds	NA	coding protein	psRNATarget
EZ049111.1	ncRNA:24   AAGGGACGUACUGCUGGCCUGCCA   1   ||=|||||*|||||=||||||||| targets:60   UUUCCUGCCUGACGGCCGGACGGU   83 Target Full Sequence	2.5	TSA: Zea mays contig50229, mRNA sequence	NA	coding protein	psRNATarget
EU970066.1	ncRNA:24   AAGGGACGUACUGCUGGCCUGCCA   1   |||=||||*|||||=||||||||| targets:964   UUCUCUGCCUGACGGCCGGACGGU   987 Target Full Sequence	2.5	Zea mays clone 339328 mRNA sequence	NA	coding protein	psRNATarget
XM_020547963.1	ncRNA:24   AAGGGACGUACUGCUGGCCUGCCA   1   ||=|||||*|||||=||||||||| targets:1113   UUUCCUGCCUGACGGCCGGACGGU   1136 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100501411), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001310588.1	ncRNA:24   AAGGGACGUACUGCUGGCCUGCCA   1   ||=|||||*|||||=||||||||| targets:1406   UUUCCUGCCUGACGGCCGGACGGU   1429 Target Full Sequence	2.5	Zea mays uncharacterized LOC100272476 (IDP716), mRNA	NA	coding protein	psRNATarget
BT085255.1	ncRNA:24   AAGGGACGUACUGCUGGCCUGCCA   1   ||=|||||*|||||=||||||||| targets:1538   UUUCCUGCCUGACGGCCGGACGGU   1561 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0345D14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196134.1	ncRNA:24   AAGGGACGUACUGCUGGCCUGCCA   1   ||=|||||*|||||=||||||||| targets:1538   UUUCCUGCCUGACGGCCGGACGGU   1561 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100501411), mRNA	NA	coding protein	psRNATarget
BT038788.1	ncRNA:24   AAGGGACGUACUGCUGGCCUGCCA   1   ||=|||||*|||||=||||||||| targets:1488   UUUCCUGCCUGACGGCCGGACGGU   1511 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0325P03 mRNA, complete cds	NA	coding protein	psRNATarget
BT061906.1	ncRNA:24   AAGGGACGUACUGCUGGCCUGCCA   1   ||=|||||*|||||*||||||||| targets:249   UUUCCUGCCUGACGUCCGGACGGU   272 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0196M13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538776.1	ncRNA:24   AAGGGACGUACUGCUGGCCUGCCA   1   ||=|||||*||||||||*|||||| targets:1714   UUUCCUGCCUGACGACCAGACGGU   1737 Target Full Sequence	2.5	PREDICTED: Zea mays transferase (LOC100191750), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538775.1	ncRNA:24   AAGGGACGUACUGCUGGCCUGCCA   1   ||=|||||*||||||||*|||||| targets:1812   UUUCCUGCCUGACGACCAGACGGU   1835 Target Full Sequence	2.5	PREDICTED: Zea mays transferase (LOC100191750), transcript variant X1, mRNA	NA	coding protein	psRNATarget