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BaseInfo

ncRNA ID novel_zma_miR1162
Species Zea mays
Class miRNA
Genome position Chr5:91982334-91982395 [+]
Reference genome RefGen_v4
Source SRR2089710;SRR2089714;SRR2089704;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - UUUUUUUAUUUGUCGCUGGAUAGU - 24
Stem-loop(if miRNA) ----                           A
    UUUUUUUAUUUGUCGCUGGAUAGUGUA A
    |||||||||||||||||||||||||||
    AGAAAAAUAAACAGCGACCUAUCACGU A
GCAA                           U
Stem-loop sequence UUUUUUUAUUUGUCGCUGGAUAGUGUAAAAUUGCACUAUCCAGCGACAAAUAAAAAGAAACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020546613.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:3745   ACUAUCCAGCGACAAAUAAAAAGA   3768

1.5 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546612.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:2966   ACUAUCCAGCGACAAAUAAAAAGA   2989

1.5 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546614.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:2860   ACUAUCCAGCGACAAAUAAAAAGA   2883

1.5 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546615.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:2843   ACUAUCCAGCGACAAAUAAAAAGA   2866

1.5 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008651543.2
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:2543   ACUAUCCAGCGACAAAUAAAAAGA   2566

1.5 PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001148943.2
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:1590   ACUAUCCAGCGACAAAUAAAAAGA   1613

1.5 Zea mays uncharacterized LOC100274590 (LOC100274590), mRNA NA coding protein psRNATarget
XM_008677073.2
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:1574   ACUAUCCAGCGACAAAUAAAAAGA   1597

1.5 PREDICTED: Zea mays probable glycosyltransferase At5g03795 (LOC103651446), mRNA NA coding protein psRNATarget
XM_008671992.2
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:1319   ACUAUCCAGCGACAAAUAAAAAGA   1342

1.5 PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008651544.2
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:1402   ACUAUCCAGCGACAAAUAAAAAGA   1425

1.5 PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008647346.2
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:188   ACUAUCCAGCGACAAAUAAAAAGA   211

1.5 PREDICTED: Zea mays E3 ubiquitin-protein ligase Os03g0188200 (LOC103626988), mRNA NA coding protein psRNATarget
NM_001156655.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:1335   ACUAUCCAGCGACAAAUAAAAAGA   1358

1.5 Zea mays wax synthase (LOC100283756), mRNA NA coding protein psRNATarget
EU965844.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:1335   ACUAUCCAGCGACAAAUAAAAAGA   1358

1.5 Zea mays clone 289333 wax synthase isoform 3 mRNA, complete cds NA coding protein psRNATarget
XM_008671993.2
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:1213   ACUAUCCAGCGACAAAUAAAAAGA   1236

1.5 PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X2, mRNA NA coding protein psRNATarget
BT060817.2
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:277   ACUAUCCAGCGACAAAUAAAAAGA   300

1.5 Zea mays full-length cDNA clone ZM_BFb0054B23 mRNA, complete cds NA coding protein psRNATarget
EZ061437.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:215   ACUAUCCAGCGACAAAUAAAAAGA   238

1.5 TSA: Zea mays contig62559, mRNA sequence NA coding protein psRNATarget
JB163740.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:58   ACUAUCCAGCGACAAAUAAAAAGA   81

1.5 Sequence 1404 from Patent EP2559767 NA coding protein psRNATarget
HI403401.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:58   ACUAUCCAGCGACAAAUAAAAAGA   81

1.5 Sequence 1526 from Patent EP2074227 NA coding protein psRNATarget
JB163862.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:58   ACUAUCCAGCGACAAAUAAAAAGA   81

1.5 Sequence 1526 from Patent EP2559767 NA coding protein psRNATarget
LQ235531.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:58   ACUAUCCAGCGACAAAUAAAAAGA   81

1.5 Sequence 1526 from Patent EP2985353 NA coding protein psRNATarget
HI403279.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:58   ACUAUCCAGCGACAAAUAAAAAGA   81

1.5 Sequence 1404 from Patent EP2074227 NA coding protein psRNATarget
LQ235409.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:58   ACUAUCCAGCGACAAAUAAAAAGA   81

1.5 Sequence 1404 from Patent EP2985353 NA coding protein psRNATarget
JB163755.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||=|||||||||||||||||
targets:58   ACUAUCUAGCGACAAAUAAAAAAA   81

1.0 Sequence 1419 from Patent EP2559767 NA coding protein psRNATarget
HI403294.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||=|||||||||||||||||
targets:58   ACUAUCUAGCGACAAAUAAAAAAA   81

1.0 Sequence 1419 from Patent EP2074227 NA coding protein psRNATarget
LQ235424.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||=|||||||||||||||||
targets:58   ACUAUCUAGCGACAAAUAAAAAAA   81

1.0 Sequence 1419 from Patent EP2985353 NA coding protein psRNATarget
HI410015.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:51   ACUAUCCAGCGACAAAUAAAAAGA   74

1.5 Sequence 8140 from Patent EP2074227 NA coding protein psRNATarget
JB170476.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:51   ACUAUCCAGCGACAAAUAAAAAGA   74

1.5 Sequence 8140 from Patent EP2559767 NA coding protein psRNATarget
LQ240748.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:51   ACUAUCCAGCGACAAAUAAAAAGA   74

1.5 Sequence 6743 from Patent EP2985353 NA coding protein psRNATarget
HI408618.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:51   ACUAUCCAGCGACAAAUAAAAAGA   74

1.5 Sequence 6743 from Patent EP2074227 NA coding protein psRNATarget
LQ242145.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:51   ACUAUCCAGCGACAAAUAAAAAGA   74

1.5 Sequence 8140 from Patent EP2985353 NA coding protein psRNATarget
JB169079.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||||||||||||||=|
targets:51   ACUAUCCAGCGACAAAUAAAAAGA   74

1.5 Sequence 6743 from Patent EP2559767 NA coding protein psRNATarget
EU957018.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |=||||||||||||||||||||=|
targets:2047   AUUAUCCAGCGACAAAUAAAAAGA   2070

1.5 Zea mays clone 1580670 cytochrome P450 CYP84A33v2 mRNA, complete cds NA coding protein psRNATarget
NM_001151882.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||=||||||||||||||||=|
targets:616   ACUAUUCAGCGACAAAUAAAAAGA   639

2.5 Zea mays uncharacterized LOC100278686 (LOC100278686), mRNA NA coding protein psRNATarget
EU974849.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||=||||||||||||||||=|
targets:616   ACUAUUCAGCGACAAAUAAAAAGA   639

2.5 Zea mays clone 459794 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU964901.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||=||||||||||||||||=|
targets:544   ACUAUUCAGCGACAAAUAAAAAGA   567

2.5 Zea mays clone 282450 mRNA sequence NA coding protein psRNATarget
LQ241746.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||=|||||||||||||||=|
targets:51   ACUAUCUAGCGACAAAUAAAAAGA   74

2.5 Sequence 7741 from Patent EP2985353 NA coding protein psRNATarget
LQ242091.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||=||||||||||||||||=|
targets:51   ACUAUUCAGCGACAAAUAAAAAGA   74

2.5 Sequence 8086 from Patent EP2985353 NA coding protein psRNATarget
LQ241075.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||=||||||||||||||||=|
targets:51   ACUAUUCAGCGACAAAUAAAAAGA   74

2.5 Sequence 7070 from Patent EP2985353 NA coding protein psRNATarget
HI408945.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||=||||||||||||||||=|
targets:51   ACUAUUCAGCGACAAAUAAAAAGA   74

2.5 Sequence 7070 from Patent EP2074227 NA coding protein psRNATarget
HI409961.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||=||||||||||||||||=|
targets:51   ACUAUUCAGCGACAAAUAAAAAGA   74

2.5 Sequence 8086 from Patent EP2074227 NA coding protein psRNATarget
JB170422.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||=||||||||||||||||=|
targets:51   ACUAUUCAGCGACAAAUAAAAAGA   74

2.5 Sequence 8086 from Patent EP2559767 NA coding protein psRNATarget
JB170077.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||=|||||||||||||||=|
targets:51   ACUAUCUAGCGACAAAUAAAAAGA   74

2.5 Sequence 7741 from Patent EP2559767 NA coding protein psRNATarget
HI409616.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||=|||||||||||||||=|
targets:51   ACUAUCUAGCGACAAAUAAAAAGA   74

2.5 Sequence 7741 from Patent EP2074227 NA coding protein psRNATarget
JB169406.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||=||||||||||||||||=|
targets:51   ACUAUUCAGCGACAAAUAAAAAGA   74

2.5 Sequence 7070 from Patent EP2559767 NA coding protein psRNATarget
JB170076.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||=|||||||||||||||=||
targets:51   ACUAUUCAGCGACAAAUAAAAGAA   74

2.5 Sequence 7740 from Patent EP2559767 NA coding protein psRNATarget
HI409615.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||=|||||||||||||||=||
targets:51   ACUAUUCAGCGACAAAUAAAAGAA   74

2.5 Sequence 7740 from Patent EP2074227 NA coding protein psRNATarget
LQ241745.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||=|||||||||||||||=||
targets:51   ACUAUUCAGCGACAAAUAAAAGAA   74

2.5 Sequence 7740 from Patent EP2985353 NA coding protein psRNATarget
NM_001175582.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||||||||||||*||||||||
targets:1479   ACUAUCCAGCGACAACUAAAAAAA   1502

1.5 Zea mays uncharacterized LOC100382893 (LOC100382893), mRNA NA coding protein psRNATarget
BT065656.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||||||||||||*||||||||
targets:1479   ACUAUCCAGCGACAACUAAAAAAA   1502

1.5 Zea mays full-length cDNA clone ZM_BFc0005B18 mRNA, complete cds NA coding protein psRNATarget
XM_020549872.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||||||||||||*||||||||
targets:1312   ACUAUCCAGCGACAACUAAAAAAA   1335

1.5 PREDICTED: Zea mays uncharacterized LOC100382893 (LOC100382893), transcript variant X1, mRNA NA coding protein psRNATarget
HI407269.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||||||||||||*||||||||
targets:53   ACUAUCCAGCGACAACUAAAAAAA   76

1.5 Sequence 5394 from Patent EP2074227 NA coding protein psRNATarget
LQ237990.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||||||||||*||||||||||
targets:52   ACUAUCCAGCGACUAAUAAAAAAA   75

1.5 Sequence 3985 from Patent EP2985353 NA coding protein psRNATarget
HI405860.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||||||||||*||||||||||
targets:52   ACUAUCCAGCGACUAAUAAAAAAA   75

1.5 Sequence 3985 from Patent EP2074227 NA coding protein psRNATarget
JB167730.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||||||||||||*||||||||
targets:53   ACUAUCCAGCGACAACUAAAAAAA   76

1.5 Sequence 5394 from Patent EP2559767 NA coding protein psRNATarget
JB166321.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||||||||||*||||||||||
targets:52   ACUAUCCAGCGACUAAUAAAAAAA   75

1.5 Sequence 3985 from Patent EP2559767 NA coding protein psRNATarget
LQ239399.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||||||||||||*||||||||
targets:53   ACUAUCCAGCGACAACUAAAAAAA   76

1.5 Sequence 5394 from Patent EP2985353 NA coding protein psRNATarget
JB169031.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||*||||||||||||||||=|
targets:51   ACUAUNCAGCGACAAAUAAAAAGA   74

2.5 Sequence 6695 from Patent EP2559767 NA coding protein psRNATarget
HI408570.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||*||||||||||||||||=|
targets:51   ACUAUNCAGCGACAAAUAAAAAGA   74

2.5 Sequence 6695 from Patent EP2074227 NA coding protein psRNATarget
LQ240700.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||*||||||||||||||||=|
targets:51   ACUAUNCAGCGACAAAUAAAAAGA   74

2.5 Sequence 6695 from Patent EP2985353 NA coding protein psRNATarget
JB166289.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||||||||||*||||||||||
targets:47   ACUAUCCAGCGACUAAUAAAAAAA   70

1.5 Sequence 3953 from Patent EP2559767 NA coding protein psRNATarget
LQ237958.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||||||||||*||||||||||
targets:47   ACUAUCCAGCGACUAAUAAAAAAA   70

1.5 Sequence 3953 from Patent EP2985353 NA coding protein psRNATarget
HI405828.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||||||||||*||||||||||
targets:47   ACUAUCCAGCGACUAAUAAAAAAA   70

1.5 Sequence 3953 from Patent EP2074227 NA coding protein psRNATarget
XM_020546173.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||||||*||||||||||||||=|
targets:1510   ACUAUCCUGCGACAAAUAAAAAGA   1533

2.5 PREDICTED: Zea mays myb-related protein P-like (LOC109943268), mRNA NA coding protein psRNATarget
XM_020544250.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||*|||||||||||||=|
targets:2482   ACUAUCCAACGACAAAUAAAAAGA   2505

2.5 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase B120 (LOC103638818), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008669416.2
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |*||||||||||=|||||||||||
targets:536   AAUAUCCAGCGAUAAAUAAAAAAA   559

1.5 PREDICTED: Zea mays hypothetical protein (LOC100275307), transcript variant X1, mRNA NA coding protein psRNATarget
HI403369.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||*|||||||||||||=|
targets:58   ACUAUCCAACGACAAAUAAAAAGA   81

2.5 Sequence 1494 from Patent EP2074227 NA coding protein psRNATarget
JB163830.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||*|||||||||||||=|
targets:58   ACUAUCCAACGACAAAUAAAAAGA   81

2.5 Sequence 1494 from Patent EP2559767 NA coding protein psRNATarget
LQ235499.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||*|||||||||||||=|
targets:58   ACUAUCCAACGACAAAUAAAAAGA   81

2.5 Sequence 1494 from Patent EP2985353 NA coding protein psRNATarget
XM_008670817.2
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||=|||=|||*||||||||||||
targets:2525   ACUGUCCGGCGCCAAAUAAAAAAA   2548

2.5 PREDICTED: Zea mays trichohyalin (LOC103646089), mRNA NA coding protein psRNATarget
EU940721.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  |||=|||=|||*||||||||||||
targets:843   ACUGUCCGGCGCCAAAUAAAAAAA   866

2.5 Zea mays clone 1060969 mRNA sequence NA coding protein psRNATarget
XM_020546479.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||*=|=|||||||||||||||=
targets:2966   ACUAAUCGGCGACAAAUAAAAAAG   2989

3.0 PREDICTED: Zea mays uncharacterized LOC100194233 (LOC100194233), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546478.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||*=|=|||||||||||||||=
targets:2966   ACUAAUCGGCGACAAAUAAAAAAG   2989

3.0 PREDICTED: Zea mays uncharacterized LOC100194233 (LOC100194233), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001352327.1
ncRNA:24   UGAUAGGUCGCUGUUUAUUUUUUU   1
  ||||||||||*||||*||||||||
targets:2716   ACUAUCCAGCAACAACUAAAAAAA   2739

2.5 Zea mays delta-1-pyrroline-5-carboxylate synthase-like (LOC103630430), mRNA NA coding protein psRNATarget
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