ncRNA ID | novel_zma_miR1161 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr5:88290906-88291009 [+] |
Reference genome | RefGen_v4 |
Source | SRR2089710 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AUCUGGACUGGGACACGCGGCGAC - 24 |
Stem-loop(if miRNA) |
--       CU GG CA GCG   -    ---UUUAC        CCAGG     C   AUCUGGA  G  A  C   GCG ACAA        UUGUCGGU     GACCC C   |||||||  |  |  |   ||| ||||        ||||||||     |||||   UAGACUU  C  U  G   CGU UGUU        AACAGCCG     CUGGG U CG       -- UU AG --A   A    UUUACUAC        CAAAG     A |
Stem-loop sequence | AUCUGGACUGGGACACGCGGCGACAAUUUACUUGUCGGUCCAGGGACCCCCUAGGGUCGAAACGCCGACAACAUCAUUUUUGUAUGCAGGAUUUCUUCAGAUGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_020546720.1 |
|
1.5 | PREDICTED: Zea mays dirigent protein 1 (LOC100285699), mRNA | NA | coding protein | psRNATarget |