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BaseInfo

ncRNA ID novel_zma_miR1161
Species Zea mays
Class miRNA
Genome position Chr5:88290906-88291009 [+]
Reference genome RefGen_v4
Source SRR2089710
Length 24
Mature sequence(if miRNA) 1 - AUCUGGACUGGGACACGCGGCGAC - 24
Stem-loop(if miRNA) --       CU GG CA GCG   -    ---UUUAC        CCAGG     C
  AUCUGGA  G  A  C   GCG ACAA        UUGUCGGU     GACCC C
  |||||||  |  |  |   ||| ||||        ||||||||     |||||
  UAGACUU  C  U  G   CGU UGUU        AACAGCCG     CUGGG U
CG       -- UU AG --A   A    UUUACUAC        CAAAG     A
Stem-loop sequence AUCUGGACUGGGACACGCGGCGACAAUUUACUUGUCGGUCCAGGGACCCCCUAGGGUCGAAACGCCGACAACAUCAUUUUUGUAUGCAGGAUUUCUUCAGAUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020546720.1
ncRNA:24   CAGCGGCGCACAGGGUCAGGUCUA   1
  |||||||||||||||||*||||||
targets:6514   GUCGCCGCGUGUCCCAGCCCAGAU   6537

1.5 PREDICTED: Zea mays dirigent protein 1 (LOC100285699), mRNA NA coding protein psRNATarget