| ncRNA ID | osa-miR5827 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr4:30081902-30082077 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 146 - UUUGUUGCAAUUUGGACUACC - 166 |
| Stem-loop(if miRNA) |
CAC A CUA - A UC A -CAAUU A CACCGGUGAACUCCUCCACCUCU UAUUUU CUUUGUUGCA UUUGGACUACC AAC C CUUCU AGC CAU CC GCC U |||||| |||||||||| ||||||||||| ||| | ||||| ||| ||| || ||| AUAAAA GAAACAACGU AAACCUGGUGG UUG G GAAGG UCG GUA GG GAG U AAU G -AG A A GA - CAGACC A GAGGUCGUUUCUAUACUUAGACG |
| Stem-loop sequence | UAUUUUCACCUUUGUUGCAAUUUGGACUACCCUAAACCACUUCUUCAGCACAUCAAUUCCAGCCCACCGGUGAACUCCUCCACCUCUUUGCAGAUUCAUAUCUUUGCUGGAGGAGAGGCCAGACAUGGCUAGGGAAGAGAGUUGAGGUGGUCCAAAGUGCAACAAAGUAAAAAAUA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK288954.1 |
|
2.5 | Oryza sativa Japonica Group cDNA, clone: J090083O05, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| BT131215.1 |
|
2.5 | Oryza sativa clone RRlibD00067 mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015768135.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278238 (LOC107278238), transcript variant X2, mRNA | uncharacterized LOC107278238(LOC107278238) | coding protein | psRNATarget | |||||||||
| XM_015768134.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278238 (LOC107278238), transcript variant X1, mRNA | uncharacterized LOC107278238(LOC107278238) | coding protein | psRNATarget |
| 1 | PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011). |