Search result

BaseInfo

ncRNA ID	novel_zma_miR1153
Species	Zea mays
Class	miRNA
Genome position	Chr5:64073430-64073551 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR3341856;SRR3341905
Length	24
Mature sequence(if miRNA)	99 - AUUCCUGGACAAACGAACAAGGCC - 122
Stem-loop(if miRNA)	----UC        C            GA  UA   CA   A     C    UGUUU  CUAAU       GUUCGUUU UUCGGGAAUGGA  CA  GAA  AUU UUAGC GAUU     CU     U       |||||||| ||||||||||||  ||  |||  ||| ||||| ||||     ||       CAAGCAAA AGGUCCUUACUU  GU  CUU  UAA GAUCG CUAG     GA     U CCGGAA        C            -A  -C   AA   -     A    -UUUU  AUAUA
Stem-loop sequence	UCGUUCGUUUCUUCGGGAAUGGAGACAUAGAACAAUUAUUAGCCGAUUUGUUUCUCUAAUUUAUAUAAGUUUUGAUCAGCUAGAAUAAUUCCUGAUUCAUUCCUGGACAAACGAACAAGGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020550419.1	ncRNA:24   CCGGAACAAGCAAACAGGUCCUUA   1   ||*||||||||||||||=|||||| targets:4365   GGGCUUGUUCGUUUGUCUAGGAAU   4388 Target Full Sequence	1.5	PREDICTED: Zea mays Transducin/WD40 repeat-like superfamily protein (LOC103650985), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008676582.2	ncRNA:24   CCGGAACAAGCAAACAGGUCCUUA   1   ||*||||||||||||||=|||||| targets:5104   GGGCUUGUUCGUUUGUCUAGGAAU   5127 Target Full Sequence	1.5	PREDICTED: Zea mays Transducin/WD40 repeat-like superfamily protein (LOC103650985), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676583.2	ncRNA:24   CCGGAACAAGCAAACAGGUCCUUA   1   ||*||||||||||||||=|||||| targets:5139   GGGCUUGUUCGUUUGUCUAGGAAU   5162 Target Full Sequence	1.5	PREDICTED: Zea mays Transducin/WD40 repeat-like superfamily protein (LOC103650985), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020552549.1	ncRNA:24   CCGGAACAAGCAAACAGGUCCUUA   1   ||*=|*|||||||||||||||||| targets:1129   GGGUUCGUUCGUUUGUCCAGGAAU   1152 Target Full Sequence	1.0	PREDICTED: Zea mays dentin sialophosphoprotein-related (LOC103653323), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020552546.1	ncRNA:24   CCGGAACAAGCAAACAGGUCCUUA   1   ||*=|*|||||||||||||||||| targets:1129   GGGUUCGUUCGUUUGUCCAGGAAU   1152 Target Full Sequence	1.0	PREDICTED: Zea mays dentin sialophosphoprotein-related (LOC103653323), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU948800.1	ncRNA:24   CCGGAACAAGCAAACAGGUCCUUA   1   **=||||||=*||||||||||||* targets:132   CCUCUUGUUUCUUUGUCCAGGAAG   155 Target Full Sequence	3.0	Zea mays clone 385646 mRNA sequence	NA	coding protein	psRNATarget
EU942956.1	ncRNA:24   CCGGAACAAGCAAACAGGUCCUUA   1   **=||||||=*||||||||||||* targets:703   CCUCUUGUUUCUUUGUCCAGGAAG   726 Target Full Sequence	3.0	Zea mays clone 1547709 mRNA sequence	NA	coding protein	psRNATarget
NM_001165761.1	ncRNA:24   CCGGAACAAGCAAACAGGUCCUUA   1   **=||||||=*||||||||||||* targets:2248   CCUCUUGUUUCUUUGUCCAGGAAG   2271 Target Full Sequence	3.0	Zea mays Microtubule-associated protein 70-1 (LOC100304320), mRNA	NA	coding protein	psRNATarget
BT060836.1	ncRNA:24   CCGGAACAAGCAAACAGGUCCUUA   1   **=||||||=*||||||||||||* targets:2248   CCUCUUGUUUCUUUGUCCAGGAAG   2271 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0058E15 mRNA, complete cds	NA	coding protein	psRNATarget