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BaseInfo

ncRNA ID	osa-miR399j
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:28873121-28873226 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	76 - UGCCAAAGGAGAGUUGCCCUA - 96
Stem-loop(if miRNA)	C     UC     UC         A  ---AU    ---   CUU AGUCCAGUUU AGGGC  CUCUC  UUGGCAGGG GC     GUGA   AGU   U |||||||||| |||||  |||||  ||||||||| ||     ||||   ||| UCAGGUCAAA UCCCG  GAGAG  AACCGUCUC CG     UACU   UCG   U           A     UU     GA         C  ACUUU    CAC   AUG
Stem-loop sequence	AGUCCAGUUUCAGGGCUCCUCUCUCUUGGCAGGGAGCAUGUGAAGUCUUUUGUAGCUCACUCAUUUUCAGCCCUCUGCCAAAGGAGAGUUGCCCUAAAACUGGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK241747.1	ncRNA:21   AUCCCGUUGAGAGGAAACCGU   1   ||||||||*|||||||||||| targets:713   UAGGGCAAAUCUCCUUUGGCA   733 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065202E18, full insert sequence	NA	coding protein	psRNATarget
AK241747.1	ncRNA:21   AUCCCGUUGAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:842   UCGGGCAAAUCUCCUUUGGCA   862 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065202E18, full insert sequence	NA	coding protein	psRNATarget
AK241747.1	ncRNA:21   AUCCCGUUGAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:925   UUGGGCAAAUCUCCUUUGGCA   945 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065202E18, full insert sequence	NA	coding protein	psRNATarget
AK241747.1	ncRNA:21   AUCCCGUUGAGAGGAAACCGU   1   **||||||*|||||||||||| targets:880   CCGGGCAAAUCUCCUUUGGCA   900 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065202E18, full insert sequence	NA	coding protein	psRNATarget
AK241747.1	ncRNA:21   AUCCCGUUGAGAGGAAACCGU   1   **||||||*|||||||||||| targets:796   CUGGGCAAAUCUCCUUUGGCA   816 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065202E18, full insert sequence	NA	coding protein	psRNATarget
XM_015784159.1	ncRNA:21   AUCCCGUUGAGAGGAAACCGU   1   ||||||||*|||||||||||| targets:820   UAGGGCAAAUCUCCUUUGGCA   840 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable ubiquitin-conjugating enzyme E2 24 (LOC4339579), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC4339579)	coding protein	psRNATarget
XM_015784159.1	ncRNA:21   AUCCCGUUGAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:949   UCGGGCAAAUCUCCUUUGGCA   969 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable ubiquitin-conjugating enzyme E2 24 (LOC4339579), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC4339579)	coding protein	psRNATarget
XM_015784159.1	ncRNA:21   AUCCCGUUGAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:1032   UUGGGCAAAUCUCCUUUGGCA   1052 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable ubiquitin-conjugating enzyme E2 24 (LOC4339579), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC4339579)	coding protein	psRNATarget
XM_015784159.1	ncRNA:21   AUCCCGUUGAGAGGAAACCGU   1   **||||||*|||||||||||| targets:987   CCGGGCAAAUCUCCUUUGGCA   1007 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable ubiquitin-conjugating enzyme E2 24 (LOC4339579), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC4339579)	coding protein	psRNATarget
XM_015784159.1	ncRNA:21   AUCCCGUUGAGAGGAAACCGU   1   **||||||*|||||||||||| targets:903   CUGGGCAAAUCUCCUUUGGCA   923 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable ubiquitin-conjugating enzyme E2 24 (LOC4339579), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC4339579)	coding protein	psRNATarget
AY100468.1	ncRNA:21   AUCCCGUUGAGAGGAAACCGU   1   *|||||||||||=|||||||* targets:263   CAGGGCAACUCUUCUUUGGCU   283 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) putative high-affinity phosphate transporter HAPT mRNA, complete cds	NA	coding protein	psRNATarget
AF335588.2	ncRNA:21   AUCCCGUUGAGAGGAAACCGU   1   *|||||||||||=|||||||* targets:283   CAGGGCAACUCUUCUUUGGCU   303 Target Full Sequence	2.5	Oryza sativa (japonica cultivar-group) phosphate transporter mRNA, complete cds	NA	coding protein	psRNATarget
XM_015793626.1	ncRNA:21   AUCCCGUUGAGAGGAAACCGU   1   *|||||||||||=|||||||* targets:286   CAGGGCAACUCUUCUUUGGCU   306 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group inorganic phosphate transporter 1-6 (LOC4346342), mRNA	inorganic phosphate transporter 1-6(LOC4346342)	coding protein	psRNATarget
AK119787.1	ncRNA:21   AUCCCGUUGAGAGGAAACCGU   1   *|||||||||||=|||||||* targets:292   CAGGGCAACUCUUCUUUGGCU   312 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-174-D01, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).