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BaseInfo

ncRNA ID novel_zma_miR1146
Species Zea mays
Class miRNA
Genome position Chr5:4437934-4438007 [-]
Reference genome RefGen_v4
Source SRR2089710;SRR2089714;SRR2287031;SRR2287161;SRR2287162;SRR1997865;SRR2089698;SRR2089699;SRR2089706;SRR2089708
Length 24
Mature sequence(if miRNA) 51 - GUGGAUUGGGUGGGAUUGAGUCGG - 74
Stem-loop(if miRNA) --                    UCG  UUAAAUCCAU
  GUGGAUUGGGUGGGAUUGAG   GU          A
  ||||||||||||||||||||   ||          A
  CACCUAACUCACCCUAAUUU   CA          C
UG                    -UA  UAAAACUAAA
Stem-loop sequence GUGGAUUGGGUGGGAUUGAGUCGGUUUAAAUCCAUAACAAAUCAAAAUACAUUUUAAUCCCACUCAAUCCACGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008675817.2
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  =||||||||||||||=||||||||
targets:4055   UCGACUCAAUCCCACUCAAUCCAC   4078

1.5 PREDICTED: Zea mays probable chromatin-remodeling complex ATPase chain (LOC103650180), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020551219.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||||||||||*|||=|||||||||
targets:287   CCGACUCAAUACCAUCCAAUCCAC   310

2.5 PREDICTED: Zea mays WW domain-binding protein 11 (LOC100280956), mRNA NA coding protein psRNATarget
HI407117.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  =|||||||||*||||||||||=||
targets:74   UCGACUCAAUACCACCCAAUCUAC   97

2.5 Sequence 5242 from Patent EP2074227 NA coding protein psRNATarget
LQ239247.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  =|||||||||*||||||||||=||
targets:74   UCGACUCAAUACCACCCAAUCUAC   97

2.5 Sequence 5242 from Patent EP2985353 NA coding protein psRNATarget
JB167578.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  =|||||||||*||||||||||=||
targets:74   UCGACUCAAUACCACCCAAUCUAC   97

2.5 Sequence 5242 from Patent EP2559767 NA coding protein psRNATarget
XM_020548583.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|||||||=|||||||||||=|
targets:3053   CCCACUCAAUUCCACCCAAUCCGC   3076

2.5 PREDICTED: Zea mays B3 domain-containing protein Os07g0563300-like (LOC109944078), mRNA NA coding protein psRNATarget
BT085111.1
ncRNA:24   GGCU-------GAGUUAGGGUGGGUUAGGUG   1
  ||||-------||||||||||=|||||||||
targets:1436   CCGAACAAGCCCUCAAUCCCAUCCAAUCCAC   1466

1.5 Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds NA coding protein psRNATarget
LQ235150.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  |=*|=||||||||||=||||||||
targets:96   CUCAUUCAAUCCCACUCAAUCCAC   119

1.5 Sequence 1145 from Patent EP2985353 NA coding protein psRNATarget
JB163481.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  |=*|=||||||||||=||||||||
targets:96   CUCAUUCAAUCCCACUCAAUCCAC   119

1.5 Sequence 1145 from Patent EP2559767 NA coding protein psRNATarget
HI403020.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  |=*|=||||||||||=||||||||
targets:96   CUCAUUCAAUCCCACUCAAUCCAC   119

1.5 Sequence 1145 from Patent EP2074227 NA coding protein psRNATarget
EU942673.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  |=*|=||||||||||=||||||||
targets:89   CUCAUUCAAUCCCACUCAAUCCAC   112

1.5 Zea mays clone 1529344 mRNA sequence NA coding protein psRNATarget
BT041052.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  |=*|=||||||||||=||||||||
targets:1122   CUCAUUCAAUCCCACUCAAUCCAC   1145

1.5 Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds NA coding protein psRNATarget
NM_001147844.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  |=*|=||||||||||=||||||||
targets:1122   CUCAUUCAAUCCCACUCAAUCCAC   1145

1.5 Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA NA coding protein psRNATarget
EU970241.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||||||||||*|||*|||||||||
targets:1119   CCGACUCAAUACCAGCCAAUCCAC   1142

2.5 Zea mays clone 342550 mRNA sequence NA coding protein psRNATarget
BT066987.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  |=*|=||||||||||=||||||||
targets:1413   CUCAUUCAAUCCCACUCAAUCCAC   1436

1.5 Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds NA coding protein psRNATarget
JB169733.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*||||||||||||||||||
targets:72   CCCAUCCAAUCCCACCCAAUCCAC   95

1.0 Sequence 7397 from Patent EP2559767 NA coding protein psRNATarget
LQ241402.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*||||||||||||||||||
targets:72   CCCAUCCAAUCCCACCCAAUCCAC   95

1.0 Sequence 7397 from Patent EP2985353 NA coding protein psRNATarget
HI409272.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*||||||||||||||||||
targets:72   CCCAUCCAAUCCCACCCAAUCCAC   95

1.0 Sequence 7397 from Patent EP2074227 NA coding protein psRNATarget
EU945995.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*||*||||||||=|||||||||
targets:551   CCCACCCAAUCCCAUCCAAUCCAC   574

2.5 Zea mays clone 293035 mRNA sequence NA coding protein psRNATarget
XM_008678390.2
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*||||||||||||||||||
targets:1809   CCCAUCCAAUCCCACCCAAUCCAC   1832

1.0 PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008678388.2
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*||||||||||||||||||
targets:1825   CCCAUCCAAUCCCACCCAAUCCAC   1848

1.0 PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA NA coding protein psRNATarget
EU957033.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*||*|||||=||||||||||||
targets:1396   CCUACCCAAUCUCACCCAAUCCAC   1419

2.5 Zea mays clone 1581039 mRNA sequence NA coding protein psRNATarget
EU957741.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*||*|||||=||||||||||||
targets:1397   CCUACCCAAUCUCACCCAAUCCAC   1420

2.5 Zea mays clone 1613489 mRNA sequence NA coding protein psRNATarget
EZ082720.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  **|==|=||||||||=||||||||
targets:66   AGGGUUUAAUCCCACUCAAUCCAC   89

2.5 TSA: Zea mays contig18363, mRNA sequence NA coding protein psRNATarget
BT066485.2
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  **|==|=||||||||=||||||||
targets:70   AGGGUUUAAUCCCACUCAAUCCAC   93

2.5 Zea mays full-length cDNA clone ZM_BFb0006P05 mRNA, complete cds NA coding protein psRNATarget
LQ238019.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:77   CCCAUCCAAUCCCACUCAAUCCAC   100

2.5 Sequence 4014 from Patent EP2985353 NA coding protein psRNATarget
HI405889.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:77   CCCAUCCAAUCCCACUCAAUCCAC   100

2.5 Sequence 4014 from Patent EP2074227 NA coding protein psRNATarget
JB166350.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:77   CCCAUCCAAUCCCACUCAAUCCAC   100

2.5 Sequence 4014 from Patent EP2559767 NA coding protein psRNATarget
LQ237971.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:87   CCCAUCCAAUCCCACUCAAUCCAC   110

2.5 Sequence 3966 from Patent EP2985353 NA coding protein psRNATarget
HI405841.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:87   CCCAUCCAAUCCCACUCAAUCCAC   110

2.5 Sequence 3966 from Patent EP2074227 NA coding protein psRNATarget
JB166302.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:87   CCCAUCCAAUCCCACUCAAUCCAC   110

2.5 Sequence 3966 from Patent EP2559767 NA coding protein psRNATarget
LQ235220.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:96   CCAAUCCAAUCCCACUCAAUCCAC   119

2.5 Sequence 1215 from Patent EP2985353 NA coding protein psRNATarget
HI403094.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:96   CCCAUCCAAUCCCACUCAAUCCAC   119

2.5 Sequence 1219 from Patent EP2074227 NA coding protein psRNATarget
HI403090.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:96   CCAAUCCAAUCCCACUCAAUCCAC   119

2.5 Sequence 1215 from Patent EP2074227 NA coding protein psRNATarget
JB163555.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:96   CCCAUCCAAUCCCACUCAAUCCAC   119

2.5 Sequence 1219 from Patent EP2559767 NA coding protein psRNATarget
JB163551.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:96   CCAAUCCAAUCCCACUCAAUCCAC   119

2.5 Sequence 1215 from Patent EP2559767 NA coding protein psRNATarget
LQ235224.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:96   CCCAUCCAAUCCCACUCAAUCCAC   119

2.5 Sequence 1219 from Patent EP2985353 NA coding protein psRNATarget
EU951448.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:743   CCCAUCCAAUCCCACUCAAUCCAC   766

2.5 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
XM_020552889.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:872   CCCAUCCAAUCCCACUCAAUCCAC   895

2.5 PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA NA coding protein psRNATarget
BT085319.2
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:174   CCCAUCCAAUCCCACUCAAUCCAC   197

2.5 Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds NA coding protein psRNATarget
BT087300.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||=||||||||||||
targets:1019   CCCAUCCAAUCUCACCCAAUCCAC   1042

2.5 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds NA coding protein psRNATarget
XM_008647186.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||=||||||||||||
targets:1052   CCCAUCCAAUCUCACCCAAUCCAC   1075

2.5 PREDICTED: Zea mays B3 domain-containing protein (LOC100192994), transcript variant X1, mRNA NA coding protein psRNATarget
BT069115.2
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:526   CCCAUCCAAUCCCACUCAAUCCAC   549

2.5 Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds NA coding protein psRNATarget
NM_001138165.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||=||||||||||||
targets:1214   CCCAUCCAAUCUCACCCAAUCCAC   1237

2.5 Zea mays B3 domain-containing protein (LOC100192994), mRNA NA coding protein psRNATarget
BT035134.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||=||||||||||||
targets:1214   CCCAUCCAAUCUCACCCAAUCCAC   1237

2.5 Zea mays full-length cDNA clone ZM_BFb0041I21 mRNA, complete cds NA coding protein psRNATarget
NM_001279968.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:1528   CCCAUCCAAUCCCACUCAAUCCAC   1551

2.5 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
BT088232.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:1528   CCCAUCCAAUCCCACUCAAUCCAC   1551

2.5 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
NM_001154031.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:1813   CCCAUCCAAUCCCACUCAAUCCAC   1836

2.5 Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA NA coding protein psRNATarget
EU955633.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:1813   CCCAUCCAAUCCCACUCAAUCCAC   1836

2.5 Zea mays clone 1540038 transposon protein mRNA, complete cds NA coding protein psRNATarget
XM_008679547.2
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:2498   CCCAUCCAAUCCCACUCAAUCCAC   2521

2.5 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
BT066874.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:1956   CCCAUCCAAUCCCACUCAAUCCAC   1979

2.5 Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds NA coding protein psRNATarget
NM_001175969.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:1956   CCCAUCCAAUCCCACUCAAUCCAC   1979

2.5 Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:1079   CCCAUCCAAUCCCACUCAAUCCAC   1102

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:1197   CCCAUCCAAUCCCACUCAAUCCAC   1220

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549842.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:1197   CCCAUCCAAUCCCACUCAAUCCAC   1220

2.5 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:1227   CCCAUCCAAUCCCACUCAAUCCAC   1250

2.5 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545430.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||*|=*|||||||||=||||||||
targets:5802   CCCAUCCAAUCCCACUCAAUCCAC   5825

2.5 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
JB169676.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||-|=*||||||||||=|||||||
targets:73   CC-AUCCAAUCCCACCUAAUCCAC   95

2.5 Sequence 7340 from Patent EP2559767 NA coding protein psRNATarget
HI409215.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||-|=*||||||||||=|||||||
targets:73   CC-AUCCAAUCCCACCUAAUCCAC   95

2.5 Sequence 7340 from Patent EP2074227 NA coding protein psRNATarget
LQ241345.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ||-|=*||||||||||=|||||||
targets:73   CC-AUCCAAUCCCACCUAAUCCAC   95

2.5 Sequence 7340 from Patent EP2985353 NA coding protein psRNATarget
JB166363.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  |=*|=*|||||||||=||||||||
targets:78   CUCAUCCAAUCCCACUCAAUCCAC   101

2.5 Sequence 4027 from Patent EP2559767 NA coding protein psRNATarget
HI405902.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  |=*|=*|||||||||=||||||||
targets:78   CUCAUCCAAUCCCACUCAAUCCAC   101

2.5 Sequence 4027 from Patent EP2074227 NA coding protein psRNATarget
LQ238032.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  |=*|=*|||||||||=||||||||
targets:78   CUCAUCCAAUCCCACUCAAUCCAC   101

2.5 Sequence 4027 from Patent EP2985353 NA coding protein psRNATarget
EZ064016.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  |=*|=*|||||||||=||||||||
targets:118   CUCAUCCAAUCCCACUCAAUCCAC   141

2.5 TSA: Zea mays contig65139, mRNA sequence NA coding protein psRNATarget
AY106055.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ==*|||=|||*|||||||||||||
targets:979   UUAACUUAAUACCACCCAAUCCAC   1002

2.0 Zea mays PCO115884 mRNA sequence NA coding protein psRNATarget
NM_001159099.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ==*|||=|||*|||||||||||||
targets:983   UUAACUUAAUACCACCCAAUCCAC   1006

2.0 Zea mays mitochondrial glycoprotein (LOC100286211), mRNA NA coding protein psRNATarget
EU976164.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  ==*|||=|||*|||||||||||||
targets:983   UUAACUUAAUACCACCCAAUCCAC   1006

2.0 Zea mays clone 679349 mitochondrial glycoprotein mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
XM_008661718.2
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  |=*|=*|||||||||=||||||||
targets:2209   CUCAUCCAAUCCCACUCAAUCCAC   2232

2.5 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA NA coding protein psRNATarget
JB166283.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  *=**=|||||||||=||||||||=
targets:88   AUUUUUCAAUCCCAUCCAAUCCAU   111

2.5 Sequence 3947 from Patent EP2559767 NA coding protein psRNATarget
LQ237952.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  *=**=|||||||||=||||||||=
targets:88   AUUUUUCAAUCCCAUCCAAUCCAU   111

2.5 Sequence 3947 from Patent EP2985353 NA coding protein psRNATarget
HI405822.1
ncRNA:24   GGCUGAGUUAGGGUGGGUUAGGUG   1
  *=**=|||||||||=||||||||=
targets:88   AUUUUUCAAUCCCAUCCAAUCCAU   111

2.5 Sequence 3947 from Patent EP2074227 NA coding protein psRNATarget