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BaseInfo

ncRNA ID	novel_zma_miR1142
Species	Zea mays
Class	miRNA
Genome position	Chr2:240835360-240835477 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	95 - GAGACUAUAUAUAUAUAUAUAUAU - 118
Stem-loop(if miRNA)	--       U                                                A   GAGACUA AUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAU U   ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||   CUUUGGU UAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUA A GA       U                                                U
Stem-loop sequence	GAGACUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUUUGGUUUCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552825.1	ncRNA:24   UAUAUAUAUAUAUAUAUA-UCAGAG   1   ||||||||||||||||||-|||||| targets:4827   AUAUAUAUAUAUAUAUAUCAGUCUC   4851 Target Full Sequence	3.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681392.2	ncRNA:24   UAUAUAUAUAUAUAUAUA-UCAGAG   1   ||||||||||||||||||-|||||| targets:4736   AUAUAUAUAUAUAUAUAUCAGUCUC   4760 Target Full Sequence	3.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008681394.2	ncRNA:24   UAUAUAUAUAUAUAUAUA-UCAGAG   1   ||||||||||||||||||-|||||| targets:4562   AUAUAUAUAUAUAUAUAUCAGUCUC   4586 Target Full Sequence	3.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008680096.2	ncRNA:24   UAUAUAUAUAUAUAUAUAUCAGAG   1   |||||||||||||||||||||=|* targets:1652   AUAUAUAUAUAUAUAUAUAGUUUA   1675 Target Full Sequence	2.5	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC103653138), mRNA	NA	coding protein	psRNATarget
XM_020541002.1	ncRNA:24   UAUAUAUAUAUAUAUAUAUCAGAG   1   |||||||||||||||||||||*|= targets:9   AUAUAUAUAUAUAUAUAUAGUAUU   32 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109940773 (LOC109940773), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541004.1	ncRNA:24   UAUAUAUAUAUAUAUAUAUCAGAG   1   |||||||||||||||||||||*|= targets:9   AUAUAUAUAUAUAUAUAUAGUAUU   32 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109940773 (LOC109940773), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT035592.1	ncRNA:24   UAUAUAUAUAUAUAUAUAUCAGAG   1   |||||||||||||||||||||*|= targets:1235   AUAUAUAUAUAUAUAUAUAGUAUU   1258 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0071B13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138483.1	ncRNA:24   UAUAUAUAUAUAUAUAUAUCAGAG   1   |||||||||||||||||||||*|= targets:1235   AUAUAUAUAUAUAUAUAUAGUAUU   1258 Target Full Sequence	2.5	Zea mays uncharacterized LOC100193350 (LOC100193350), mRNA	NA	coding protein	psRNATarget
EU950122.1	ncRNA:24   UAUAUAUAUAUAUAUAUAUCAGAG   1   ||||||||||||||||||||*||= targets:747   AUAUAUAUAUAUAUAUAUAGCCUU   770 Target Full Sequence	2.5	Zea mays clone 461971 mRNA sequence	NA	coding protein	psRNATarget
NM_001152958.1	ncRNA:24   UAUAUAUAUAUAUAUAUAUCAGAG   1   |||||||||||||||||||*|||* targets:1722   AUAUAUAUAUAUAUAUAUAUUCUA   1745 Target Full Sequence	2.5	Zea mays Non-specific phospholipase C2 (LOC100280012), mRNA	NA	coding protein	psRNATarget
BT055348.1	ncRNA:24   UAUAUAUAUAUAUAUAUAUCAGAG   1   |||||||||||||||||||*|||* targets:1722   AUAUAUAUAUAUAUAUAUAUUCUA   1745 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0062K03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020544884.1	ncRNA:24   UAUAUAUAUAUAUAUAUAUCAGAG   1   =|=||||||||||||||||*|||| targets:3992   GUGUAUAUAUAUAUAUAUAUUCUC   4015 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100193544), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008663195.2	ncRNA:24   UAUAUAUAUAUAUAUAUAUCAGAG   1   =|=||||||||||||||||*|||| targets:3982   GUGUAUAUAUAUAUAUAUAUUCUC   4005 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100193544), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001147843.1	ncRNA:24   UAUAUAUAUAUAUAUAUAUCAGAG   1   ||*|||||||||||||=||||||* targets:1897   AUUUAUAUAUAUAUAUGUAGUCUA   1920 Target Full Sequence	2.5	Zea mays uncharacterized LOC100273406 (LOC100273406), mRNA	NA	coding protein	psRNATarget
BT041051.1	ncRNA:24   UAUAUAUAUAUAUAUAUAUCAGAG   1   ||*|||||||||||||=||||||* targets:1897   AUUUAUAUAUAUAUAUGUAGUCUA   1920 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0169J16 mRNA, complete cds	NA	coding protein	psRNATarget
BT067793.1	ncRNA:24   UAUAUAUAUAUAUAUAUAUCAGAG   1   ||*|||||||||||||=||||||* targets:1681   AUUUAUAUAUAUAUAUGUAGUCUA   1704 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0159H14 mRNA, complete cds	NA	coding protein	psRNATarget
BT060840.1	ncRNA:24   UAUAUAUAUAUAUAUAUAUCAGAG   1   ||*|||||||||||||=||||||* targets:1268   AUUUAUAUAUAUAUAUGUAGUCUA   1291 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0058P09 mRNA, complete cds	NA	coding protein	psRNATarget
DQ244330.1	ncRNA:24   UAUAUAUAUAUAUAUAUAUCAGAG   1   *|*||||||||||||||||||||* targets:441   CUCUAUAUAUAUAUAUAUAGUCUG   464 Target Full Sequence	1.0	Zea mays clone 4934 mRNA sequence	NA	coding protein	psRNATarget