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BaseInfo

ncRNA ID	novel_zma_miR1137
Species	Zea mays
Class	miRNA
Genome position	Chr5:50448744-50448930 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2287164;SRR1997866;SRR2089700;SRR2089702;SRR2089704;SRR2089705;SRR2089706;SRR2089707;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - AAAUAUCUGAACCAAACGGUACCA - 24
Stem-loop(if miRNA)	--               A  --AA       CAAA      -    UU  A  U     C   CG  AACA     G --A     C       AUUU   GUGCUGUUUGGUUCA GA    UGUAACG    GGGUAA UGAU  AC UU GAUUA UGU  GU    AGUUU A   UAGUC GGUAUCA    U   ||||||||||||||| ||    |||||||    |||||| ||||  || || ||||| |||  ||    ||||| |   ||||| |||||||   CAUGGCAAACCAAGU CU    ACAUUGC    CCCGUU ACUA  UG AA UUAGU AUA  CA    UCAGA U   AUUAG CUAUGGU    U AC               -  AUAA       AUUG      C    -U  C  U     -   AA  -AAA     G GGC     U       AUGA
Stem-loop sequence	GUGCUGUUUGGUUCAAGAAAUGUAACGCAAAGGGUAAUGAUUUACAUUUGAUUACUGUCGGUAACAAGUUUGAAUAGUCCGGUAUCAAUUUUUAGUAUGGUAUCUGAUUACGGUGAGACUAAAACAAAUAUGAUUUAACGUUAUCACUUGCCCGUUACGUUACAAAUAUCUGAACCAAACGGUACCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU949392.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *||||||||||||||||||||||| targets:1039   GGGUACCGUUUGGUUCAGAUAUUU   1062 Target Full Sequence	0.0	Zea mays clone 404319 mRNA sequence	NA	coding protein	psRNATarget
EZ079515.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   |||||||||||||||||*|||||| targets:95   UGGUACCGUUUGGUUCAAAUAUUU   118 Target Full Sequence	1.5	TSA: Zea mays contig15154, mRNA sequence	NA	coding protein	psRNATarget
EU945130.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   **|||||||||||||||||||||| targets:359   CUGUACCGUUUGGUUCAGAUAUUU   382 Target Full Sequence	0.0	Zea mays clone 241984 mRNA sequence	NA	coding protein	psRNATarget
AY106246.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   ||||=||||||||||||*|||||| targets:1407   UGGUGCCGUUUGGUUCACAUAUUU   1430 Target Full Sequence	1.5	Zea mays PCO105094 mRNA sequence	NA	coding protein	psRNATarget
XM_008679572.2	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   ||||=||||||||||||*|||||| targets:2264   UGGUGCCGUUUGGUUCACAUAUUU   2287 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100283847 (pco105094(492)), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008652121.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|||||||||||||||||||||*| targets:823   GGGUACCGUUUGGUUCAGAUAUCU   846 Target Full Sequence	1.5	PREDICTED: Zea mays probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic (LOC103631126), mRNA	NA	coding protein	psRNATarget
EU960786.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *||||||||||||||||*|||||| targets:1292   AGGUACCGUUUGGUUCAAAUAUUU   1315 Target Full Sequence	1.5	Zea mays clone 228656 mRNA sequence	NA	coding protein	psRNATarget
XM_008683144.2	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *||||||||||||||||*|||||| targets:1349   AGGUACCGUUUGGUUCAAAUAUUU   1372 Target Full Sequence	1.5	PREDICTED: Zea mays Synaptotagmin-2 (AY111680), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001150646.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *||||||||||||||||*|||||| targets:690   AGGUACCGUUUGGUUCAAAUAUUU   713 Target Full Sequence	1.5	Zea mays uncharacterized LOC100276958 (LOC100276958), mRNA	NA	coding protein	psRNATarget
EU965910.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *||||||||||||||||*|||||| targets:690   AGGUACCGUUUGGUUCAAAUAUUU   713 Target Full Sequence	1.5	Zea mays clone 289922 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ051347.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|||=||||||||||||*|||||| targets:64   AGGUGCCGUUUGGUUCACAUAUUU   87 Target Full Sequence	1.5	TSA: Zea mays contig52467, mRNA sequence	NA	coding protein	psRNATarget
EZ051494.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|||=||||||||||||*|||||| targets:118   AGGUGCCGUUUGGUUCACAUAUUU   141 Target Full Sequence	1.5	TSA: Zea mays contig52614, mRNA sequence	NA	coding protein	psRNATarget
EU971290.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|||=||||||||||||*|||||| targets:626   GGGUGCCGUUUGGUUCACAUAUUU   649 Target Full Sequence	1.5	Zea mays clone 361496 mRNA sequence	NA	coding protein	psRNATarget
EU951063.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|||=||||||||||||*|||||| targets:738   AGGUGCCGUUUGGUUCAUAUAUUU   761 Target Full Sequence	1.5	Zea mays clone 687358 mRNA sequence	NA	coding protein	psRNATarget
XM_008656774.2	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|||=||||||||||||*|||||| targets:908   AGGUGCCGUUUGGUUCACAUAUUU   931 Target Full Sequence	1.5	PREDICTED: Zea mays beta-hydroxyacyl-ACP dehydratase (LOC100283232), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT063743.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|||=||||||||||||*|||||| targets:878   AGGUGCCGUUUGGUUCACAUAUUU   901 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0102O24 mRNA, complete cds	NA	coding protein	psRNATarget
BT019257.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   ||||=||||||||||||*|||||* targets:996   UGGUGCCGUUUGGUUCAUAUAUUG   1019 Target Full Sequence	2.5	Zea mays clone Contig930.F mRNA sequence	NA	coding protein	psRNATarget
XM_020543750.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|||=||||||||||||*|||||| targets:1245   AGGUGCCGUUUGGUUCAUAUAUUU   1268 Target Full Sequence	1.5	PREDICTED: Zea mays Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (pco101658), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU969502.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|||=||||||||||||*|||||| targets:1307   GGGUGCCGUUUGGUUCACAUAUUU   1330 Target Full Sequence	1.5	Zea mays clone 331112 mRNA sequence	NA	coding protein	psRNATarget
XM_008660564.2	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|||=||||||||||||*|||||| targets:1416   AGGUGCCGUUUGGUUCAUAUAUUU   1439 Target Full Sequence	1.5	PREDICTED: Zea mays Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (pco101658), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660561.2	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|||=||||||||||||*|||||| targets:1419   AGGUGCCGUUUGGUUCAUAUAUUU   1442 Target Full Sequence	1.5	PREDICTED: Zea mays Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (pco101658), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660562.2	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|||=||||||||||||*|||||| targets:1424   AGGUGCCGUUUGGUUCAUAUAUUU   1447 Target Full Sequence	1.5	PREDICTED: Zea mays Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (pco101658), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT085887.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|||=||||||||||||*|||||| targets:1405   AGGUGCCGUUUGGUUCACAUAUUU   1428 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0076I18 mRNA, complete cds	NA	coding protein	psRNATarget
AY150644.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|||=||||||||||||*|||||| targets:1533   AGGUGCCGUUUGGUUCACAUAUUU   1556 Target Full Sequence	1.5	Zea mays fertilization-independent endosperm protein 2 mRNA, complete cds	NA	coding protein	psRNATarget
EU941092.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|||=|=||||||||||*|||||| targets:611   AGGUGCUGUUUGGUUCACAUAUUU   634 Target Full Sequence	2.5	Zea mays clone 1287623 mRNA sequence	NA	coding protein	psRNATarget
BT019235.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|||=|=||||||||||*|||||| targets:138   AGGUGCUGUUUGGUUCACAUAUUU   161 Target Full Sequence	2.5	Zea mays clone Contig908.F mRNA sequence	NA	coding protein	psRNATarget
EU942786.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|||=|=||||||||||*|||||| targets:169   AGGUGCUGUUUGGUUCACAUAUUU   192 Target Full Sequence	2.5	Zea mays clone 1536686 mRNA sequence	NA	coding protein	psRNATarget
XM_008678575.2	ncRNA:23   CCAUGGCAAACCAAGUCUAUAAA   1   |||==|||||||||||*|||||| targets:1   GGUGUCGUUUGGUUCACAUAUUU   23 Target Full Sequence	2.5	PREDICTED: Zea mays Protein LURP-one-related 8 (pco085810), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678573.2	ncRNA:23   CCAUGGCAAACCAAGUCUAUAAA   1   |||==|||||||||||*|||||| targets:1   GGUGUCGUUUGGUUCACAUAUUU   23 Target Full Sequence	2.5	PREDICTED: Zea mays Protein LURP-one-related 8 (pco085810), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT055676.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|||=|=||||||||||*|||||| targets:2249   AGGUGCUGUUUGGUUCACAUAUUU   2272 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0101E03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154302.2	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|||=|=||||||||||*|||||| targets:2265   AGGUGCUGUUUGGUUCACAUAUUU   2288 Target Full Sequence	2.5	Zea mays PCO063726_ov (IDP142), mRNA	NA	coding protein	psRNATarget
EU956566.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|||=|=||||||||||*|||||| targets:2266   AGGUGCUGUUUGGUUCACAUAUUU   2289 Target Full Sequence	2.5	Zea mays clone 1566749 SLT1 protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676395.2	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|||=|=||||||||||*|||||| targets:2455   AGGUGCUGUUUGGUUCACAUAUUU   2478 Target Full Sequence	2.5	PREDICTED: Zea mays PCO063726_ov (IDP142), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT017312.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   |*||=|=||||||||||*|||||| targets:604   UAGUGCUGUUUGGUUCACAUAUUU   627 Target Full Sequence	2.5	Zea mays clone EL01N0317H11.c mRNA sequence	NA	coding protein	psRNATarget
XM_008666280.2	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   **||=|=||||||||||*|||||| targets:1499   GAGUGCUGUUUGGUUCACAUAUUU   1522 Target Full Sequence	2.5	PREDICTED: Zea mays WAS/WASL-interacting protein family member 2 (LOC103643126), mRNA	NA	coding protein	psRNATarget
XM_008664618.2	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   *|*||=|||||||||||*|||||| targets:1892   AGAUAUCGUUUGGUUCACAUAUUU   1915 Target Full Sequence	2.5	PREDICTED: Zea mays dnaJ homolog subfamily B member 4 (LOC103641254), mRNA	NA	coding protein	psRNATarget
BT064264.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   ***|=||||||||||||*|||||| targets:2185   CUUUGCCGUUUGGUUCACAUAUUU   2208 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0153M22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175167.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   ***|=||||||||||||*|||||| targets:2185   CUUUGCCGUUUGGUUCACAUAUUU   2208 Target Full Sequence	1.5	Zea mays Peroxisomal acyl-coenzyme A oxidase 1 (LOC100382424), mRNA	NA	coding protein	psRNATarget
AY105897.2	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   ***|=||||||||||||*|||||| targets:2268   CUUUGCCGUUUGGUUCACAUAUUU   2291 Target Full Sequence	1.5	Zea mays PCO085554 mRNA sequence	NA	coding protein	psRNATarget
XM_020543760.1	ncRNA:24   ACCAUGGCAAACCAAGUCUAUAAA   1   ***|=||||||||||||*|||||| targets:2326   CUUUGCCGUUUGGUUCACAUAUUU   2349 Target Full Sequence	1.5	PREDICTED: Zea mays Peroxisomal acyl-coenzyme A oxidase 1 (LOC100382424), transcript variant X1, mRNA	NA	coding protein	psRNATarget