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BaseInfo

ncRNA ID	novel_zma_miR1134
Species	Zea mays
Class	miRNA
Genome position	Chr5:85249994-85250082 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089715
Length	20
Mature sequence(if miRNA)	70 - GUGGAUUGAGGAGGAUUGGA - 89
Stem-loop(if miRNA)	--G         GA         ---U    UAAAUUCUCUCUUUU    UGGAUUGAG  GGAUUGGAG    GAAU               A    |||||||||  |||||||||    ||||    AUCUAACUC  CCUAACCUC    AGAA               C AUG         AC         CCCU    GAAUAUAAAUUUAUA
Stem-loop sequence	GUGGAUUGAGGAGGAUUGGAGUGAAUUAAAUUCUCUCUUUUACAUAUUUAAAUAUAAGAAGAUCCCCUCCAAUCCCACUCAAUCUAGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238033.1	ncRNA:20   AGGUUAGGAGGAGUUAGGUG   1   |||||||||*|||||||||| targets:81   UCCAAUCCUGCUCAAUCCAC   100 Target Full Sequence	1.5	Sequence 4028 from Patent EP2985353	NA	coding protein	psRNATarget
HI405903.1	ncRNA:20   AGGUUAGGAGGAGUUAGGUG   1   |||||||||*|||||||||| targets:81   UCCAAUCCUGCUCAAUCCAC   100 Target Full Sequence	1.5	Sequence 4028 from Patent EP2074227	NA	coding protein	psRNATarget
JB166364.1	ncRNA:20   AGGUUAGGAGGAGUUAGGUG   1   |||||||||*|||||||||| targets:81   UCCAAUCCUGCUCAAUCCAC   100 Target Full Sequence	1.5	Sequence 4028 from Patent EP2559767	NA	coding protein	psRNATarget
EU942657.1	ncRNA:20   AGGUUAGGAGGAGUUAGGUG   1   |||||||||*|||||||||| targets:237   UCCAAUCCUACUCAAUCCAC   256 Target Full Sequence	1.5	Zea mays clone 1527578 mRNA sequence	NA	coding protein	psRNATarget
AY103719.1	ncRNA:20   AGGUUAGGAGGAGUUAGGUG   1   |||||||||*|||||||||| targets:880   UCCAAUCCUGCUCAAUCCAC   899 Target Full Sequence	1.5	Zea mays PCO137008 mRNA sequence	NA	coding protein	psRNATarget
EU949831.1	ncRNA:20   AGGUUAGGAGGAGUUAGGUG   1   |||||||||*|||||||||| targets:1015   UCCAAUCCUACUCAAUCCAC   1034 Target Full Sequence	1.5	Zea mays clone 447574 mRNA sequence	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:20   AGGUUAGGAGGAGUUAGGUG   1   ||||||||*||||||||||| targets:3278   UCCAAUCCCCCUCAAUCCAC   3297 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:20   AGGUUAGGAGGAGUUAGGUG   1   ||||||||*||||||||||| targets:1599   UCCAAUCCCCCUCAAUCCAC   1618 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:20   AGGUUAGGAGGAGUUAGGUG   1   ||||||||*||||||||||| targets:1599   UCCAAUCCCCCUCAAUCCAC   1618 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008666493.2	ncRNA:20   AGGUUAGGAGGAGUUAGGUG   1   |||||||||*|||||||||| targets:3482   UCCAAUCCUACUCAAUCCAC   3501 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546709.1	ncRNA:20   AGGUUAGGAGGAGUUAGGUG   1   |||||||||*|||||||||| targets:3468   UCCAAUCCUACUCAAUCCAC   3487 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008666491.2	ncRNA:20   AGGUUAGGAGGAGUUAGGUG   1   |||||||||*|||||||||| targets:3750   UCCAAUCCUACUCAAUCCAC   3769 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666492.2	ncRNA:20   AGGUUAGGAGGAGUUAGGUG   1   |||||||||*|||||||||| targets:3755   UCCAAUCCUACUCAAUCCAC   3774 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI408824.1	ncRNA:20   AGGUUAGGAGGAGUUAGGUG   1   *=|||||||||||||||||= targets:80   CUCAAUCCUCCUCAAUCCAU   99 Target Full Sequence	2.0	Sequence 6949 from Patent EP2074227	NA	coding protein	psRNATarget
JB169285.1	ncRNA:20   AGGUUAGGAGGAGUUAGGUG   1   *=|||||||||||||||||= targets:80   CUCAAUCCUCCUCAAUCCAU   99 Target Full Sequence	2.0	Sequence 6949 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240954.1	ncRNA:20   AGGUUAGGAGGAGUUAGGUG   1   *=|||||||||||||||||= targets:80   CUCAAUCCUCCUCAAUCCAU   99 Target Full Sequence	2.0	Sequence 6949 from Patent EP2985353	NA	coding protein	psRNATarget
EU942133.1	ncRNA:20   AGGUUAGGAGGAGUUAGGUG   1   ||||||*|||=||||||||| targets:198   UCCAAUACUCUUCAAUCCAC   217 Target Full Sequence	2.5	Zea mays clone 1476690 mRNA sequence	NA	coding protein	psRNATarget
EU941788.1	ncRNA:20   AGGUUAGGAGGAGUUAGGUG   1   ||||||*|||=||||||||| targets:188   UCCAAUACUCUUCAAUCCAC   207 Target Full Sequence	2.5	Zea mays clone 1470119 mRNA sequence	NA	coding protein	psRNATarget