Search result

BaseInfo

ncRNA ID novel_zma_miR1131
Species Zea mays
Class miRNA
Genome position Chr5:144126659-144126728 [-]
Reference genome RefGen_v4
Source SRR2089710
Length 24
Mature sequence(if miRNA) 1 - AAAAUAACCUUAUUUUCGGCGGCC - 24
Stem-loop(if miRNA) --              AC             CGUG
  CCGCCGAAAAUAAG  UAUUUUCGGCGGC    U
  ||||||||||||||  |||||||||||||
  GGCGGCUUUUAUUC  AUAAAAGCCGCCG    C
CC              CA             AAGA
Stem-loop sequence CCGCCGAAAAUAAGACUAUUUUCGGCGGCCGUGUCAGAAGCCGCCGAAAAUAACCUUAUUUUCGGCGGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020546193.1
ncRNA:24   CCGGCGGCUUUUAUUCCAAUAAAA   1
  ||||||||||||||||||||||||
targets:522   GGCCGCCGAAAAUAAGGUUAUUUU   545

0.0 PREDICTED: Zea mays spidroin-1-like (LOC103636899), mRNA NA coding protein psRNATarget
BT065567.1
ncRNA:24   CCGGCGGCUUUUAUUCCAAUAAAA   1
  *||||||||||||||||*||||||
targets:1033   AGCCGCCGAAAAUAAGGCUAUUUU   1056

1.5 Zea mays full-length cDNA clone ZM_BFb0298D06 mRNA, complete cds NA coding protein psRNATarget
BT065567.1
ncRNA:24   CCGGCGGCUUUUAUUCCAAUAAAA   1
  *||||||||||||||||*||||||
targets:1074   AGCCGCCGAAAAUAAGGCUAUUUU   1097

1.5 Zea mays full-length cDNA clone ZM_BFb0298D06 mRNA, complete cds NA coding protein psRNATarget