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BaseInfo

ncRNA ID	novel_zma_miR1130
Species	Zea mays
Class	miRNA
Genome position	Chr5:147044869-147044916 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2287031;SRR2287159;SRR2287161;SRR2287164;SRR2287165;SRR1997865;SRR5451003;SRR5451004;SRR5451005;SRR2089699;SRR2089700;SRR2089701;SRR2089702;SRR2089705;SRR2089707
Length	22
Mature sequence(if miRNA)	1 - GAUUGAUAUGGAUUGAGAGGGA - 22
Stem-loop(if miRNA)	--A              G    GG    UUUUUAAUCCAUAU GAUC  A    |||||||||||||| ||||    GAGAGUUAGGUAUA UUAG  G AGG              G    GG
Stem-loop sequence	AUUUUUAAUCCAUAUGGAUCGGAGGGGAUUGAUAUGGAUUGAGAGGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001348011.1	ncRNA:22   AGGGAGAGUUAGGUAUAGUUAG   1   ||=||||||||||||||||||| targets:429   UCUCUCUCAAUCCAUAUCAAUC   450 Target Full Sequence	0.0	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
XM_020539810.1	ncRNA:22   AGGGAGAGUUAGGUAUAGUUAG   1   |||||=|||||||=|||||||| targets:683   UCCCUUUCAAUCCGUAUCAAUC   704 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:22   AGGGAGAGUUAGGUAUAGUUAG   1   ||||||*||||||=|||||||| targets:1964   UCCCUCCCAAUCCGUAUCAAUC   1985 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:22   AGGGAGAGUUAGGUAUAGUUAG   1   ||||||*||||||=|||||||| targets:1964   UCCCUCCCAAUCCGUAUCAAUC   1985 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
BT018999.1	ncRNA:22   AGGGAGAGUUAGGUAUAGUUAG   1   |||||||||||||||||*|||= targets:468   UCCCUCUCAAUCCAUAUGAAUU   489 Target Full Sequence	2.5	Zea mays clone Contig487.F mRNA sequence	NA	coding protein	psRNATarget
XM_020545207.1	ncRNA:22   AGGGAGAGUUAGGUAUAGUUAG   1   ||=|||*||||||=|||||||| targets:6   UCUCUCCCAAUCCGUAUCAAUC   27 Target Full Sequence	2.5	PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA	NA	coding protein	psRNATarget
EU965203.1	ncRNA:22   AGGGAGAGUUAGGUAUAGUUAG   1   ||=|*||||||||=|||||||| targets:872   UCUCCCUCAAUCCGUAUCAAUC   893 Target Full Sequence	2.5	Zea mays clone 284456 threonine endopeptidase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156482.1	ncRNA:22   AGGGAGAGUUAGGUAUAGUUAG   1   ||=|*||||||||=|||||||| targets:872   UCUCCCUCAAUCCGUAUCAAUC   893 Target Full Sequence	2.5	Zea mays threonine endopeptidase (LOC100283581), mRNA	NA	coding protein	psRNATarget
XM_020542702.1	ncRNA:22   AGGGAGAGUUAGGUAUAGUUAG   1   *|=||||||||*|||||||||| targets:51   ACUCUCUCAAUACAUAUCAAUC   72 Target Full Sequence	1.5	PREDICTED: Zea mays aldehyde dehydrogenase family 2 member C4 (LOC103637346), mRNA	NA	coding protein	psRNATarget
NM_001147345.1	ncRNA:22   AGGGAGAGUUAGGUAUAGUUAG   1   |**||||||||||||||*|||= targets:1655   UAGCUCUCAAUCCAUAUGAAUU   1676 Target Full Sequence	2.5	Zea mays uncharacterized LOC100272892 (LOC100272892), mRNA	NA	coding protein	psRNATarget
BT039694.1	ncRNA:22   AGGGAGAGUUAGGUAUAGUUAG   1   |**||||||||||||||*|||= targets:1655   UAGCUCUCAAUCCAUAUGAAUU   1676 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0039F21 mRNA, complete cds	NA	coding protein	psRNATarget
BT062929.1	ncRNA:22   AGGGAGAGUUAGGUAUAGUUAG   1   |**||||||||||||||*|||= targets:1554   UAGCUCUCAAUCCAUAUGAAUU   1575 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0008K15 mRNA, complete cds	NA	coding protein	psRNATarget
EU956028.1	ncRNA:22   AGGGAGAGUUAGGUAUAGUUAG   1   |**||||||||||||||*|||= targets:1465   UAGCUCUCAAUCCAUAUGAAUU   1486 Target Full Sequence	2.5	Zea mays clone 1555850 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget