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BaseInfo

ncRNA ID	osa-miR2877
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:28585208-28585568 [-]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	47 - UUGCAUCCUCUGCACUUUGGGCCU - 70
Stem-loop(if miRNA)	----------------------                    UC   U              U  C      UG   ---   GAUGUGGCAAUCCACGGUGGUGAGAAUUUUGCAUUUAGCCCCCUCAUGCUACAGUAUGCCUUCAAGUCUACUCCCACCACUCCCAAAUCUUUUGGUGCAUGGCUUAAAC                       AAUCUUGGUUUAAUGUAUCA  CGA GUCCAAAGUGCAGA GA GCAGCU  GGU   GCU                                                                                                             U                       ||||||||||||||||||||  ||| |||||||||||||| || ||||||  |||   |||                       UUAGAACCAAAUUACAUAGU  GCU CGGGUUUCACGUCU CU CGUUGA  CCG   AGG                                                                                                             A AAAGGGAGAUUUUUUGUGGGAA                    GA   C              C  A      GU   AAC   UGUCACUGCUCUUAAAACGUGAAUGCGGAGAAGUGAUAUCAUACGGGGCUUUAGCUGAGGAUGGUGGGGUUUAGUUGUUUAUACGUAAAGAGUCGUAGGUCGUUUAAGU
Stem-loop sequence	AAUCUUGGUUUAAUGUAUCAUCCGAUGUCCAAAGUGCAGAUGACGCAGCUUGGGUGCUGAUGUGGCAAUCCACGGUGGUGAGAAUUUUGCAUUUAGCCCCCUCAUGCUACAGUAUGCCUUCAAGUCUACUCCCACCACUCCCAAAUCUUUUGGUGCAUGGCUUAAACUAUGAAUUUGCUGGAUGCUGAGAAAUGCAUAUUUGUUGAUUUGGGGUGGUAGGAGUCGAUUUCGGGGCAUACUAUAGUGAAGAGGCGUAAGUGCAAAAUUCUCGUCACUGUGGACAAGCCUGAGUUGCAUCCUCUGCACUUUGGGCCUCGAGUGAUACAUUAAACCAAGAUUAAGGGUGUUUUUUAGAGGGAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015773924.1	ncRNA:24   UCCGGGUUUCACGUCUCCUACGUU   1   |||*||||=**||||||||||||| targets:614   AGGGCCAAGAAGCAGAGGAUGCAA   637 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group AP2-like ethylene-responsive transcription factor ANT (LOC4332156), transcript variant X4, mRNA	AP2-like ethylene-responsive transcription factor ANT(LOC4332156)	coding protein	psRNATarget
XM_015773922.1	ncRNA:24   UCCGGGUUUCACGUCUCCUACGUU   1   |||*||||=**||||||||||||| targets:617   AGGGCCAAGAAGCAGAGGAUGCAA   640 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group AP2-like ethylene-responsive transcription factor ANT (LOC4332156), transcript variant X2, mRNA	AP2-like ethylene-responsive transcription factor ANT(LOC4332156)	coding protein	psRNATarget
XM_015773923.1	ncRNA:24   UCCGGGUUUCACGUCUCCUACGUU   1   |||*||||=**||||||||||||| targets:614   AGGGCCAAGAAGCAGAGGAUGCAA   637 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group AP2-like ethylene-responsive transcription factor ANT (LOC4332156), transcript variant X3, mRNA	AP2-like ethylene-responsive transcription factor ANT(LOC4332156)	coding protein	psRNATarget
XM_015773921.1	ncRNA:24   UCCGGGUUUCACGUCUCCUACGUU   1   |||*||||=**||||||||||||| targets:617   AGGGCCAAGAAGCAGAGGAUGCAA   640 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group AP2-like ethylene-responsive transcription factor ANT (LOC4332156), transcript variant X1, mRNA	AP2-like ethylene-responsive transcription factor ANT(LOC4332156)	coding protein	psRNATarget
AK106306.1	ncRNA:24   UCCGGGUUUCACGUCUCCUACGUU   1   |||*||||=**||||||||||||| targets:618   AGGGCCAAGAAGCAGAGGAUGCAA   641 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-101-C10, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:19903869 "Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009).