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BaseInfo

ncRNA ID	novel_zma_miR1125
Species	Zea mays
Class	miRNA
Genome position	Chr5:24346657-24346810 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089711;SRR2089713;SRR2089714
Length	24
Mature sequence(if miRNA)	1 - UCGGUUAGGGCUUGUUCGGUUAGC - 24
Stem-loop(if miRNA)	--   G       -            C    --A     UG       AG          -U    UUAAAUCCUAAAUA   UCG UUAGGGC UUGUUCGGUUAG UCUC   AUCCA  UGGAUUG  UGGGAUUGGG  GGGU              A   ||| ||||||| |||||||||||| ||||   |||||  |||||||  ||||||||||  ||||              G   GGU AAUUCCG AACAAGCCAAUU AGGG   UGGGU  ACCUAAC  ACCCUAACCU  UUUA              U UU   G       G            -    CAA     --       CU          UU    AUUUUUCCUUAAAC
Stem-loop sequence	UCGGUUAGGGCUUGUUCGGUUAGCUCUCAAUCCAUGUGGAUUGAGUGGGAUUGGGUGGGUUUAAAUCCUAAAUAAGUCAAAUUCCUUUUUAAUUUUUUCCAAUCCCAUCCAAUCCAUGGGUAACGGGAUUAACCGAACAAGGCCUUAAGUGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001154031.1	ncRNA:24   CGAUUGGCUUGUUCGGGAUUGGCU   1   |||||||||||||||||||||||= targets:1848   GCUAACCGAACAAGCCCUAACCGG   1871 Target Full Sequence	1.0	Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA	NA	coding protein	psRNATarget
EU955633.1	ncRNA:24   CGAUUGGCUUGUUCGGGAUUGGCU   1   |||||||||||||||||||||||= targets:1848   GCUAACCGAACAAGCCCUAACCGG   1871 Target Full Sequence	1.0	Zea mays clone 1540038 transposon protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543938.1	ncRNA:24   CGAUUGGCUUGUUCGGGAUUGGCU   1   **|||||||||||||||||||=|| targets:318   AAUAACCGAACAAGCCCUAACUGA   341 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020543937.1	ncRNA:24   CGAUUGGCUUGUUCGGGAUUGGCU   1   **|||||||||||||||||||=|| targets:318   AAUAACCGAACAAGCCCUAACUGA   341 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020543936.1	ncRNA:24   CGAUUGGCUUGUUCGGGAUUGGCU   1   **|||||||||||||||||||=|| targets:318   AAUAACCGAACAAGCCCUAACUGA   341 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020543935.1	ncRNA:24   CGAUUGGCUUGUUCGGGAUUGGCU   1   **|||||||||||||||||||=|| targets:318   AAUAACCGAACAAGCCCUAACUGA   341 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU949284.1	ncRNA:24   CG-AUUGGCUUGUUCGGGAUUGGCU   1   ||-|||||||||||||||||||*|| targets:664   GCGUAACCGAACAAGCCCUAACGGA   688 Target Full Sequence	1.5	Zea mays clone 400720 mRNA sequence	NA	coding protein	psRNATarget
DQ244893.1	ncRNA:24   CG-AUUGGCUUGUUCGGGAUUGGCU   1   ||-|||||||||||||||||||*|| targets:764   GCGUAACCGAACAAGCCCUAACGGA   788 Target Full Sequence	1.5	Zea mays clone 11585 mRNA sequence	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   CGAUUGGCUUGUUCGGGAUUGGCU   1   **|||||||||||||||||||*|= targets:1189   AAUAACCGAACAAGCCCUAACAGG   1212 Target Full Sequence	2.5	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   CGAUUGGCUUGUUCGGGAUUGGCU   1   **|||||||||||||||||||*|= targets:1227   AAUAACCGAACAAGCCCUAACAGG   1250 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget