Search result

BaseInfo

ncRNA ID	novel_zma_miR1124
Species	Zea mays
Class	miRNA
Genome position	Chr2:240613317-240613387 [+]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647385;SRR2647387;SRR2647390;SRR2647391;SRR2647467;SRR1583943
Length	24
Mature sequence(if miRNA)	1 - AAGAUCUAUGGCGCCGACCCCCGU - 24
Stem-loop(if miRNA)	--                      GUGU   CG    U   AAGAUCUAUGGCGCCGACCCCC    CGG  GCGC A   ||||||||||||||||||||||    |||  |||| C   UUCUAGAUACCGCGGCUGGGGG    GCC  UGUG A GG                      ----   --    C
Stem-loop sequence	AAGAUCUAUGGCGCCGACCCCCGUGUCGGCGGCGCUACACGUGUCCGGGGGGUCGGCGCCAUAGAUCUUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008668233.1	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   =||||||||||||||||||||||| targets:181   GCGGGGGUCGGCGCCAUAGAUCUU   204 Target Full Sequence	0.0	PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA	NA	coding protein	psRNATarget
XM_008668233.1	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   |*||||||||||||||*||||||| targets:241   AGGGGGGUCGGCGCCACAGAUCUU   264 Target Full Sequence	1.5	PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA	NA	coding protein	psRNATarget
XM_020538176.1	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   ||*||||||||||||||||||||| targets:289   ACCGGGGUCGGCGCCAUAGAUCUU   312 Target Full Sequence	0.0	PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA	NA	coding protein	psRNATarget
XM_020544775.1	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   **|||||||||||||||||||||| targets:61   CAGGGGGUCGGCGCCAUAGAUCUU   84 Target Full Sequence	0.0	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109942650), mRNA	NA	coding protein	psRNATarget
XM_020545863.1	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   **|||||||||||||||||||||| targets:127   CGGGGGGUCGGCGCCAUAGAUCUU   150 Target Full Sequence	0.0	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1-like (LOC109943065), mRNA	NA	coding protein	psRNATarget
XM_020547098.1	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   **|||||||||||||||||||||| targets:127   CGGGGGGUCGGCGCCAUAGAUCUU   150 Target Full Sequence	0.0	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103637036), mRNA	NA	coding protein	psRNATarget
XM_020538144.1	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   **|*|||||||||||||||||||| targets:103   CAGAGGGUCGGCGCCAUAGAUCUU   126 Target Full Sequence	0.0	PREDICTED: Zea mays pEARLI1-like lipid transfer protein 1 (LOC103628601), mRNA	NA	coding protein	psRNATarget
XM_020549155.1	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   **|*|||||||||||||=|||||| targets:5   CAGAGGGUCGGCGCCAUGGAUCUU   28 Target Full Sequence	1.5	PREDICTED: Zea mays extensin-like (LOC109944402), mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   ||*|*|*||||||||||||||||| targets:128   ACCGAGCUCGGCGCCAUAGAUCUU   151 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   *|*|*|*||||||||||||||||| targets:1220   UCCGAGCUCGGCGCCAUAGAUCUU   1243 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   ||*|*|*||||||||||||||||| targets:126   ACCGAGCUCGGCGCCAUAGAUCUU   149 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   *|*|*|*||||||||||||||||| targets:1218   UCCGAGCUCGGCGCCAUAGAUCUU   1241 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   ||*|*|*||||||||||||||||| targets:186   ACCGAGCUCGGCGCCAUAGAUCUU   209 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   *|*|*|*||||||||||||||||| targets:1277   UCCGAGCUCGGCGCCAUAGAUCUU   1300 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   ||*|*|*||||||||||||||||| targets:186   ACCGAGCUCGGCGCCAUAGAUCUU   209 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   *|*|*|*||||||||||||||||| targets:1277   UCCGAGCUCGGCGCCAUAGAUCUU   1300 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666663.2	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   *|*|*|*||||||||||||||||| targets:780   UCCGAGCUCGGCGCCAUAGAUCUU   803 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA	NA	coding protein	psRNATarget
XM_020543535.1	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   ||*****||||||||||||||||| targets:280   ACACAUCUCGGCGCCAUAGAUCUU   303 Target Full Sequence	2.0	PREDICTED: Zea mays proline-rich protein HaeIII subfamily 1-like (LOC109942121), mRNA	NA	coding protein	psRNATarget
XM_008678030.1	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   |=|****||||||||||||||||| targets:1   AUGUACCUCGGCGCCAUAGAUCUU   24 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103652452 (LOC103652452), mRNA	NA	coding protein	psRNATarget
XM_020544295.1	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   |||****||||||||||||||||| targets:2   ACGUACCUCGGCGCCAUAGAUCUU   25 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA	NA	coding protein	psRNATarget
BT038470.1	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   ||*****||||||||||||||||| targets:1672   ACACAUCUCGGCGCCAUAGAUCUU   1695 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0274N23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001146799.1	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   ||*****||||||||||||||||| targets:1672   ACACAUCUCGGCGCCAUAGAUCUU   1695 Target Full Sequence	2.0	Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), mRNA	NA	coding protein	psRNATarget
XM_020547329.1	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   ||*****||||||||||||||||| targets:1754   ACACAUCUCGGCGCCAUAGAUCUU   1777 Target Full Sequence	2.0	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547327.1	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   ||*****||||||||||||||||| targets:1779   ACACAUCUCGGCGCCAUAGAUCUU   1802 Target Full Sequence	2.0	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008668082.2	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   ||*****||||||||||||||||| targets:1786   ACACAUCUCGGCGCCAUAGAUCUU   1809 Target Full Sequence	2.0	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001137355.1	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   ||*|*|*|||||||||*||||||| targets:754   ACCGAGCUCGGCGCCACAGAUCUU   777 Target Full Sequence	2.5	Zea mays SAUR56-auxin-responsive SAUR family member (LOC100191931), mRNA	NA	coding protein	psRNATarget
BT034188.1	ncRNA:24   UGCCCCCAGCCGCGGUAUCUAGAA   1   ||*|*|*|||||||||*||||||| targets:754   ACCGAGCUCGGCGCCACAGAUCUU   777 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0029I19 mRNA, complete cds	NA	coding protein	psRNATarget