Search result

BaseInfo

ncRNA ID	novel_zma_miR1123
Species	Zea mays
Class	miRNA
Genome position	Chr5:23246555-23246780 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR5451004;SRR2089703
Length	24
Mature sequence(if miRNA)	1 - ACAUAGAAGACUGGUGCACAUGGU - 24
Stem-loop(if miRNA)	--    A   G C                                                   A          -AUUAUU  A     A  U           C ACUACA   ACAU GAA A UGGUGCACAUGGUGCACAUAUUAAAUCAUCACCACUCAUUUUAGAUCUAAC UCUCUAGUUG       CA UUUAC AA AAUACCUUCCA C      C   |||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       || ||||| || ||||||||||| |      A   UGUA CUU U ACCACGUGUACCACGUGUAUAAUUUAGUAGUGGUGAGUAAAAUCUAGAUUG AGAGAUCAAC       GU AAAUG UU UUGUGGGAGGU G      C CG    C   G A                                                   C          AAACCAU  A     A  C           U CACCAC
Stem-loop sequence	ACAUAGAAGACUGGUGCACAUGGUGCACAUAUUAAAUCAUCACCACUCAUUUUAGAUCUAACAUCUCUAGUUGAUUAUUCAAUUUACAAAUAAUACCUUCCACCACUACACACCACCACGUUGGAGGGUGUUCUUAGUAAAAUGUACCAAACAACUAGAGACGUUAGAUCUAAAAUGAGUGGUGAUGAUUUAAUAUGUGCACCAUGUGCACCAAUGUUCCAUGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552764.1	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |||||||*|||||||||||||||| targets:3118   ACCAUGUACACCAGUCUUCUAUGU   3141 Target Full Sequence	1.0	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681116.2	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |||||||*|||||||||||||||| targets:3296   ACCAUGUACACCAGUCUUCUAUGU   3319 Target Full Sequence	1.0	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163459.1	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |=|||||*|||||*|||||||||| targets:224   AUCAUGUACACCAAUCUUCUAUGU   247 Target Full Sequence	2.5	Sequence 1123 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235128.1	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |=|||||*|||||*|||||||||| targets:224   AUCAUGUACACCAAUCUUCUAUGU   247 Target Full Sequence	2.5	Sequence 1123 from Patent EP2985353	NA	coding protein	psRNATarget
HI402998.1	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |=|||||*|||||*|||||||||| targets:224   AUCAUGUACACCAAUCUUCUAUGU   247 Target Full Sequence	2.5	Sequence 1123 from Patent EP2074227	NA	coding protein	psRNATarget