Search result

BaseInfo

ncRNA ID	novel_zma_miR1122
Species	Zea mays
Class	miRNA
Genome position	Chr5:198466668-198466799 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR5451005;SRR5451006;SRR1997866;SRR2089699;SRR2089700;SRR2089704
Length	24
Mature sequence(if miRNA)	109 - AGGACUUGUUCGGUUACACCAAUC - 132
Stem-loop(if miRNA)	--   A U                    AG               U       C     U     U   AGG C UGUUCGGUUACACCAAUCCA  AGGGGAUUGGAGGGG UUAAAUC CCUCC AGUCA U   ||| | ||||||||||||||||||||  ||||||||||||||| ||||||| ||||| |||||   UCC G ACAAGCCAAUGUGGUUAGGU  UCCUCUAACCUCUCC AAUUUAG GGAGG UCAGU U AU   C U                    CU               U       U     U     U
Stem-loop sequence	AGGACUUGUUCGGUUACACCAAUCCAAGAGGGGAUUGGAGGGGUUUAAAUCCCCUCCUAGUCAUUUUUGACUUGGAGGUGAUUUAAUCCUCUCCAAUCUCCUUCUGGAUUGGUGUAACCGAACAUGCCCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548160.1	ncRNA:24   CUAACCACAUUGGCUUGUUCAGGA   1   ||||||||||||||||||||*||| targets:4818   GAUUGGUGUAACCGAACAAGCCCU   4841 Target Full Sequence	1.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:24   CUAACCACAUUGGCUUGUUCAGGA   1   ||||||||||||||||||||*||| targets:5045   GAUUGGUGUAACCGAACAAGCCCU   5068 Target Full Sequence	1.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI406796.1	ncRNA:24   CUAACCACAUUGGCUUGUUCAGGA   1   |||||*||||||||||||||*||| targets:117   GAUUGAUGUAACCGAACAAGCCCU   140 Target Full Sequence	2.5	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:24   CUAACCACAUUGGCUUGUUCAGGA   1   |||||*||||||||||||||*||| targets:117   GAUUGAUGUAACCGAACAAGCCCU   140 Target Full Sequence	2.5	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
JB167257.1	ncRNA:24   CUAACCACAUUGGCUUGUUCAGGA   1   |||||*||||||||||||||*||| targets:117   GAUUGAUGUAACCGAACAAGCCCU   140 Target Full Sequence	2.5	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
EU957179.1	ncRNA:24   CUAACCACAUUGGCUUGUUCAGGA   1   |||*||||||||||||||||*||| targets:1584   GAUCGGUGUAACCGAACAAGCCCU   1607 Target Full Sequence	1.5	Zea mays clone 1584995 mRNA sequence	NA	coding protein	psRNATarget
EU949284.1	ncRNA:24   CUAACCACAUUGGCUUGUUCAGGA   1   |=||*|*|||||||||||||*||| targets:659   GGUUAGCGUAACCGAACAAGCCCU   682 Target Full Sequence	2.5	Zea mays clone 400720 mRNA sequence	NA	coding protein	psRNATarget
DQ244893.1	ncRNA:24   CUAACCACAUUGGCUUGUUCAGGA   1   |=||*|*|||||||||||||*||| targets:759   GGUUAGCGUAACCGAACAAGCCCU   782 Target Full Sequence	2.5	Zea mays clone 11585 mRNA sequence	NA	coding protein	psRNATarget
EU965297.1	ncRNA:24   CUAACCACAUUGGCUUGUUCAGGA   1   ******|||||||||||||||||| targets:1168   AUACCUUGUAACCGAACAAGUCCU   1191 Target Full Sequence	1.0	Zea mays clone 285080 PRKR interacting protein 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156517.1	ncRNA:24   CUAACCACAUUGGCUUGUUCAGGA   1   ******|||||||||||||||||| targets:1168   AUACCUUGUAACCGAACAAGUCCU   1191 Target Full Sequence	1.0	Zea mays PRKR interacting protein 1 (cl40218_1), mRNA	NA	coding protein	psRNATarget