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BaseInfo

ncRNA ID novel_zma_miR1120
Species Zea mays
Class miRNA
Genome position Chr5:221216124-221216198 [-]
Reference genome RefGen_v4
Source SRR2089710
Length 24
Mature sequence(if miRNA) 1 - AGGAAAAGAGAAUACACAGGCUGA - 24
Stem-loop(if miRNA) --           -        U  CUU      G   A
  AGUUUGUGUAU CUCUUUUC CU   UUUUCU CAU U
  ||||||||||| |||||||| ||   |||||| ||| C
  UCGGACACAUA GAGAAAAG GA   AAGAGA GUG U
AG           A        -  -CC      -   G
Stem-loop sequence AGUUUGUGUAUCUCUUUUCUCUCUUUUUUCUGCAUAUCUGGUGAGAGAACCAGGAAAAGAGAAUACACAGGCUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT069496.1
ncRNA:24   AGU-CGGACACAUAAGAGAAAAGGA   1
  |||-|=|||*||||||||||||=||
targets:945   UCAUGUCUGAGUAUUCUCUUUUUCU   969

2.5 Zea mays full-length cDNA clone ZM_BFb0163E17 mRNA, complete cds NA coding protein psRNATarget
NM_001322002.1
ncRNA:24   AGU-CGGACACAUAAGAGAAAAGGA   1
  |||-|=|||*||||||||||||=||
targets:2673   UCAUGUCUGAGUAUUCUCUUUUUCU   2697

2.5 Zea mays hypothetical protein (LOC100384210), mRNA NA coding protein psRNATarget