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BaseInfo

ncRNA ID osa-miR171h
Species Oryza sativa
Class miRNA
Genome position Chr4:28482456-28482556 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 54 - GUGAGCCGAACCAAUAUCACU - 74
Stem-loop(if miRNA) ----------A   -      G      UU        U             GUU
           GAA GAAGAG ACAUGG  UGGUAUUG UUCGGCUCAUGUC   C
           ||| |||||| ||||||  |||||||| |||||||||||||   A
           CUU CUUCUU UGUACU  ACUAUAAC AAGCCGAGUGUAG   C
UCUUCAAGAGA   A      A      -C        C             ACA
Stem-loop sequence AGAAGAAGAGGACAUGGUUUGGUAUUGUUUCGGCUCAUGUCGUUCACACAGAUGUGAGCCGAACCAAUAUCACUCAUGUAUUCUUCAUUCAGAGAACUUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015774539.1
ncRNA:21   UCACUAUAACCAAGCCGAGUG   1
  =|||||||||||||||||||*
targets:564   GGUGAUAUUGGUUCGGCUCAA   584

1.0 PREDICTED: Oryza sativa Japonica Group nodulation-signaling pathway 2 protein-like (LOC107276070), mRNA nodulation-signaling pathway 2 protein-like(LOC107276070) coding protein psRNATarget

Reference

1 PMID:15258262
"Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis";
Sunkar R, Zhu JK;
Plant Cell. 16:2001-2019(2004).