ncRNA ID | osa-miR171h |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr4:28482456-28482556 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 54 - GUGAGCCGAACCAAUAUCACU - 74 |
Stem-loop(if miRNA) |
----------A   -      G      UU        U             GUU            GAA GAAGAG ACAUGG  UGGUAUUG UUCGGCUCAUGUC   C            ||| |||||| ||||||  |||||||| |||||||||||||   A            CUU CUUCUU UGUACU  ACUAUAAC AAGCCGAGUGUAG   C UCUUCAAGAGA   A      A      -C        C             ACA |
Stem-loop sequence | AGAAGAAGAGGACAUGGUUUGGUAUUGUUUCGGCUCAUGUCGUUCACACAGAUGUGAGCCGAACCAAUAUCACUCAUGUAUUCUUCAUUCAGAGAACUUCU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_015774539.1 |
|
1.0 | PREDICTED: Oryza sativa Japonica Group nodulation-signaling pathway 2 protein-like (LOC107276070), mRNA | nodulation-signaling pathway 2 protein-like(LOC107276070) | coding protein | psRNATarget |
1 | PMID:15258262
"Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"; Sunkar R, Zhu JK; Plant Cell. 16:2001-2019(2004). |