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BaseInfo

ncRNA ID	novel_zma_miR1117
Species	Zea mays
Class	miRNA
Genome position	Chr2:240581695-240581831 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	23
Mature sequence(if miRNA)	1 - CUCUUAGGGCUAGUUUGGAAACU - 23
Stem-loop(if miRNA)	--CU   --                                      A U   UUAG   GGG       UA     CUU  AGGGCUAGUUUGGAAACUUAAAUCCUCUCUUGGAUUCC G GGA    GGG   GGAGAGU  G     |||  |||||||||||||||||||||||||||||||||||||| | |||    |||   |||||||     GAA  UCUCGAUCAAACCUUUGAAUUUAGGGGAGAGCUUAAGG C CCU    CCC   CCUUUUA  U CCUU   AC                                      - -   -UAA   --A       CU
Stem-loop sequence	CUCUUAGGGCUAGUUUGGAAACUUAAAUCCUCUCUUGGAUUCCAGUGGAUUAGGGGGGGGGAGAGUUAGUUCAUUUUCCACCCAAUUCCCGGAAUUCGAGAGGGGAUUUAAGUUUCCAAACUAGCUCUCAAAGUUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020550081.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   |||||||||||||||=||||||* targets:2436   AGUUUCCAAACUAGCUCUAAGAU   2458 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109944788 (LOC109944788), mRNA	NA	coding protein	psRNATarget
EZ069159.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   ||||||||||||||||||*|||| targets:94   AGUUUCCAAACUAGCCCUUAGAG   116 Target Full Sequence	1.5	TSA: Zea mays contig04794, mRNA sequence	NA	coding protein	psRNATarget
NM_001350117.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   =|||||=|||||||||||||||* targets:3274   GGUUUCUAAACUAGCCCUAAGAA   3296 Target Full Sequence	2.0	Zea mays uncharacterized LOC100283404 (pco107270a), mRNA	NA	coding protein	psRNATarget
XM_008676590.2	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   ||||||||||||||||||||*|* targets:4101   AGUUUCCAAACUAGCCCUAAAAU   4123 Target Full Sequence	2.5	PREDICTED: Zea mays Asparagine synthase family protein (si683017d09), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ239236.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   ||||||||||||||||||*|||* targets:99   AGUUUCCAAACUAGCCCUUAGAA   121 Target Full Sequence	2.5	Sequence 5231 from Patent EP2985353	NA	coding protein	psRNATarget
HI407106.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   ||||||||||||||||||*|||* targets:99   AGUUUCCAAACUAGCCCUUAGAA   121 Target Full Sequence	2.5	Sequence 5231 from Patent EP2074227	NA	coding protein	psRNATarget
JB167567.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   ||||||||||||||||||*|||* targets:99   AGUUUCCAAACUAGCCCUUAGAA   121 Target Full Sequence	2.5	Sequence 5231 from Patent EP2559767	NA	coding protein	psRNATarget
EU942791.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   *|*||||||||||||||||||=| targets:523   UGCUUCCAAACUAGCCCUAAGGG   545 Target Full Sequence	1.5	Zea mays clone 1536943 mRNA sequence	NA	coding protein	psRNATarget
EU946584.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   |||*||||||||||*|||||||| targets:558   AGUAUCCAAACUAGACCUAAGAG   580 Target Full Sequence	1.5	Zea mays clone 317794 mRNA sequence	NA	coding protein	psRNATarget
XM_020547541.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   =|||||*|||||||||||*|||| targets:2052   GGUUUCGAAACUAGCCCUUAGAG   2074 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654031.2	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   *|*||||||||*||||||||||| targets:1700   UGCUUCCAAACAAGCCCUAAGAG   1722 Target Full Sequence	1.5	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY103846.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   |||*||||||||||*|||||||* targets:1019   AGUAUCCAAACUAGACCUAAGAU   1041 Target Full Sequence	2.5	Zea mays PCO130752 mRNA sequence	NA	coding protein	psRNATarget
BT066687.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   |||*||||||||||*|||||||* targets:915   AGUAUCCAAACUAGACCUAAGAU   937 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0047M01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175915.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   |||*||||||||||*|||||||* targets:915   AGUAUCCAAACUAGACCUAAGAU   937 Target Full Sequence	2.5	Zea mays U2 small nuclear ribonucleoprotein B'' (LOC100383254), mRNA	NA	coding protein	psRNATarget
LQ238393.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   *|||*|||||||||||||||*|| targets:111   UGUUCCCAAACUAGCCCUAAUAG   133 Target Full Sequence	2.5	Sequence 4388 from Patent EP2985353	NA	coding protein	psRNATarget
HI406263.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   *|||*|||||||||||||||*|| targets:111   UGUUCCCAAACUAGCCCUAAUAG   133 Target Full Sequence	2.5	Sequence 4388 from Patent EP2074227	NA	coding protein	psRNATarget
JB166724.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   *|||*|||||||||||||||*|| targets:111   UGUUCCCAAACUAGCCCUAAUAG   133 Target Full Sequence	2.5	Sequence 4388 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020545633.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   *|*||=|||||||||||*||||| targets:7929   UGCUUUCAAACUAGCCCAAAGAG   7951 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020545626.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   *|*||=|||||||||||*||||| targets:7937   UGCUUUCAAACUAGCCCAAAGAG   7959 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545631.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   *|*||=|||||||||||*||||| targets:7902   UGCUUUCAAACUAGCCCAAAGAG   7924 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020545629.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   *|*||=|||||||||||*||||| targets:7937   UGCUUUCAAACUAGCCCAAAGAG   7959 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020545630.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   *|*||=|||||||||||*||||| targets:7937   UGCUUUCAAACUAGCCCAAAGAG   7959 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020545628.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   *|*||=|||||||||||*||||| targets:7782   UGCUUUCAAACUAGCCCAAAGAG   7804 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020545634.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   *|*||=|||||||||||*||||| targets:7632   UGCUUUCAAACUAGCCCAAAGAG   7654 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X10, mRNA	NA	coding protein	psRNATarget
EU952092.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   *|*||=|||||||||||*||||| targets:494   UGCUUUCAAACUAGCCCAAAGAG   516 Target Full Sequence	2.5	Zea mays clone 1163776 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU942630.1	ncRNA:23   UCAAAGGUUUGAUCGGGAUUCUC   1   *|*||=|||||||||||*||||| targets:131   UGCUUUCAAACUAGCCCAAAGAG   153 Target Full Sequence	2.5	Zea mays clone 1525408 mRNA sequence	NA	coding protein	psRNATarget