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BaseInfo

ncRNA ID novel_zma_miR1115
Species Zea mays
Class miRNA
Genome position Chr5:202049470-202049523 [+]
Reference genome RefGen_v4
Source SRR2089710;SRR2089713;SRR2089714;SRR2089715;SRR2287159;SRR2287160;SRR2287161;SRR2287162;SRR2287163;SRR2287164;SRR1997865;SRR2089698;SRR2089699;SRR2089700;SRR2089704;SRR2089706;SRR2089707
Length 24
Mature sequence(if miRNA) 1 - GUCCACGGUCCGGACUGUCCGCGG - 24
Stem-loop(if miRNA) --  C    GUC             GU
  GU CACG   CGGACUGUCCGCG  G
  || ||||   |||||||||||||  G
  CG GUGC   GCCUGGCAGGCGC  U
GA  C    -GC             GG
Stem-loop sequence GUCCACGGUCCGGACUGUCCGCGGUGGUGGCGCGGACGGUCCGCGCGUGCGCAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ059430.1
ncRNA:24   GGCGCCUGUCAGGCCUGGCACCUG   1
  *|||||||*||||||||||*||||
targets:47   GCGCGGACCGUCCGGACCGCGGAC   70

2.5 TSA: Zea mays contig60552, mRNA sequence NA coding protein psRNATarget
EU940813.1
ncRNA:24   GGCGCCUGUCAGGCCUGGCACCUG   1
  *|||||||*||||||||||*||||
targets:60   GCGCGGACCGUCCGGACCGCGGAC   83

2.5 Zea mays clone 1145688 mRNA sequence NA coding protein psRNATarget