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BaseInfo

ncRNA ID	novel_zma_miR1112
Species	Zea mays
Class	miRNA
Genome position	Chr5:195805846-195805996 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2287165
Length	24
Mature sequence(if miRNA)	1 - ACUACAUUUAAUACUCGGAACGGA - 24
Stem-loop(if miRNA)	--                G                        G  CAU                   U    -     ACUACAUUUAAUACUC GAACGGAGGUUCAAACAUUCGAUG GA   GGGCUAAAUUUUAGCGGGG GUAA CCA   |||||||||||||||| |||||||||||||||||||||||| ||   ||||||||||||||||||| |||| ||A   UGAUGUAAAUUAUGGG CUUGCCUCCAAGUUUGUAAGCUAC CU   CCCGAUUUAAAAUCGUCCC CGUU GGA GC                G                        A  AUC                   -    U
Stem-loop sequence	ACUACAUUUAAUACUCGGAACGGAGGUUCAAACAUUCGAUGGGACAUGGGCUAAAUUUUAGCGGGGUGUAACCAAAGGUUUGCCCCUGCUAAAAUUUAGCCCCUAUCACAUCGAAUGUUUGAACCUCCGUUCGGGGUAUUAAAUGUAGUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544947.1	ncRNA:24   AGGCAAGGCUCAUAAUUUACAUCA   1   |||||||||||||||||||||||| targets:2773   UCCGUUCCGAGUAUUAAAUGUAGU   2796 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100273701 (LOC100273701), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU941151.1	ncRNA:24   AGGCAAGGCUCAUAAUUUACAUCA   1   ||||||=||=|||||||||||||| targets:784   UCCGUUUCGGGUAUUAAAUGUAGU   807 Target Full Sequence	2.0	Zea mays clone 1341984 mRNA sequence	NA	coding protein	psRNATarget
BT065587.1	ncRNA:24   AGGCAAGGCUCAUAAUUUACAUCA   1   |||||||*|||||||||||||||| targets:367   UCCGUUCGGAGUAUUAAAUGUAGU   390 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0316E21 mRNA, complete cds	NA	coding protein	psRNATarget
JB163849.1	ncRNA:24   AGGCAAGGCUCAUAAUUUACAUCA   1   |||||||*|=|||||||||||||| targets:36   UCCGUUCGGGGUAUUAAAUGUAGU   59 Target Full Sequence	2.0	Sequence 1513 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235518.1	ncRNA:24   AGGCAAGGCUCAUAAUUUACAUCA   1   |||||||*|=|||||||||||||| targets:36   UCCGUUCGGGGUAUUAAAUGUAGU   59 Target Full Sequence	2.0	Sequence 1513 from Patent EP2985353	NA	coding protein	psRNATarget
HI403388.1	ncRNA:24   AGGCAAGGCUCAUAAUUUACAUCA   1   |||||||*|=|||||||||||||| targets:36   UCCGUUCGGGGUAUUAAAUGUAGU   59 Target Full Sequence	2.0	Sequence 1513 from Patent EP2074227	NA	coding protein	psRNATarget
AY104898.1	ncRNA:24   AGGCAAGGCUCAUAAUUUACAUCA   1   |||*|||||=|||||||||||||| targets:1221   UCCAUUCCGGGUAUUAAAUGUAGU   1244 Target Full Sequence	1.0	Zea mays PCO078090 mRNA sequence	NA	coding protein	psRNATarget
NM_001139394.1	ncRNA:24   AGGCAAGGCUCAUAAUUUACAUCA   1   |||*|||||=|||||||||||||| targets:1213   UCCAUUCCGGGUAUUAAAUGUAGU   1236 Target Full Sequence	1.0	Zea mays uncharacterized LOC100194359 (pco078090), mRNA	NA	coding protein	psRNATarget
BT036886.1	ncRNA:24   AGGCAAGGCUCAUAAUUUACAUCA   1   |||*|||||=|||||||||||||| targets:1213   UCCAUUCCGGGUAUUAAAUGUAGU   1236 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0146B11 mRNA, complete cds	NA	coding protein	psRNATarget
EU968043.1	ncRNA:24   AGGCAAGGCUCAUAAUUUACAUCA   1   |||||||*|=|||||||||||||| targets:1448   UCCGUUCGGGGUAUUAAAUGUAGU   1471 Target Full Sequence	2.0	Zea mays clone 313378 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT054237.2	ncRNA:24   AGGCAAGGCUCAUAAUUUACAUCA   1   |||||||*|=|||||||||||||| targets:867   UCCGUUCGGGGUAUUAAAUGUAGU   890 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0189C11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152444.1	ncRNA:24   AGGCAAGGCUCAUAAUUUACAUCA   1   |||||||*|=|||||||||||||| targets:867   UCCGUUCGGGGUAUUAAAUGUAGU   890 Target Full Sequence	2.0	Zea mays uncharacterized LOC100279435 (LOC100279435), mRNA	NA	coding protein	psRNATarget
XM_008667260.2	ncRNA:24   AGGCAAGGCUCAUAAUUUACAUCA   1   |||||||*|=|||||||||||||| targets:2016   UCCGUUCAGGGUAUUAAAUGUAGU   2039 Target Full Sequence	2.0	PREDICTED: Zea mays allene oxide synthase 1, chloroplastic (LOC103644066), mRNA	NA	coding protein	psRNATarget
LQ235462.1	ncRNA:24   AGGCAAGGCUCAUAAUUUACAUCA   1   ||*||||*|=*||||||||||||| targets:36   UCAGUUCGGGUUAUUAAAUGUAGU   59 Target Full Sequence	3.0	Sequence 1457 from Patent EP2985353	NA	coding protein	psRNATarget
JB163793.1	ncRNA:24   AGGCAAGGCUCAUAAUUUACAUCA   1   ||*||||*|=*||||||||||||| targets:36   UCAGUUCGGGUUAUUAAAUGUAGU   59 Target Full Sequence	3.0	Sequence 1457 from Patent EP2559767	NA	coding protein	psRNATarget
HI403332.1	ncRNA:24   AGGCAAGGCUCAUAAUUUACAUCA   1   ||*||||*|=*||||||||||||| targets:36   UCAGUUCGGGUUAUUAAAUGUAGU   59 Target Full Sequence	3.0	Sequence 1457 from Patent EP2074227	NA	coding protein	psRNATarget