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BaseInfo

ncRNA ID	novel_zma_miR1110
Species	Zea mays
Class	miRNA
Genome position	Chr5:192540047-192540111 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089707
Length	24
Mature sequence(if miRNA)	42 - ACAGGACUGUCCGGUGCGCCCAUC - 65
Stem-loop(if miRNA)	--G C              -   ACAA    UGU    G GGCGCAUCGGACAG CCU    UGCC   C    | |||||||||||||| |||    ||||    C CCGCGUGGCCUGUC GGA    GCGG   C CUA -              A   -CAC    UGG
Stem-loop sequence	GGCGGCGCAUCGGACAGCCUACAAUGCCUGUCCGGUGGCGCACAGGACUGUCCGGUGCGCCCAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ108756.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   |||||||||||||||||||||*|| targets:144   GAUGGGCGCACCGGACAGUCCGGU   167 Target Full Sequence	1.5	TSA: Zea mays contig44415, mRNA sequence	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   ||||||=||||||||||||||*|| targets:587   GAUGGGUGCACCGGACAGUCCGGU   610 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *=**||=||||||||||||||*|| targets:821   CGCUGGUGCACCGGACAGUCCGGU   844 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   ||||||=||||||||||||||*|| targets:587   GAUGGGUGCACCGGACAGUCCGGU   610 Target Full Sequence	2.5	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *=**||=||||||||||||||*|| targets:821   CGCUGGUGCACCGGACAGUCCGGU   844 Target Full Sequence	2.5	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CUA-CCCGCGUGGCCUGUCAGGACA   1   *||-||||||||||||||||||*|| targets:482   CAUCGGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CUAC-CCGCGUGGCCUGUCAGGACA   1   |||*-|||||||||||||||||*|| targets:578   GAUCUGGCGCACCGGACAGUCCGGU   602 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *=|*|||*|||||||||||||*|| targets:677   CGUUGGCUCACCGGACAGUCCGGU   700 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CUA-CCCGCGUGGCCUGUCAGGACA   1   *||-||||||||||||||||||*|| targets:482   CAUCGGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CUAC-CCGCGUGGCCUGUCAGGACA   1   |||*-|||||||||||||||||*|| targets:578   GAUCUGGCGCACCGGACAGUCCGGU   602 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *=|*|||*|||||||||||||*|| targets:677   CGUUGGCUCACCGGACAGUCCGGU   700 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   CUA-CCCGCGUGGCCUGUCAGGACA   1   *||-||||||||||||||||||*|| targets:4376   CAUCGGGCGCACCGGACAGUCCGGU   4400 Target Full Sequence	1.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *|*||||||||||||||||||*|| targets:330   CACGGGCGCACCGGACAGUCCGGU   353 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *=|*|||*|||||||||||||*|| targets:541   CGUUGGCUCACCGGACAGUCCGGU   564 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *|*||||||||||||||||||*|| targets:330   CACGGGCGCACCGGACAGUCCGGU   353 Target Full Sequence	1.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *=|*|||*|||||||||||||*|| targets:541   CGUUGGCUCACCGGACAGUCCGGU   564 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   |**||||||||||||||||||*|| targets:495   GUCGGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	1.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *=|*|||*|||||||||||||*|| targets:716   CGUUGGCUCACCGGACAGUCCGGU   739 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   |**||||||||||||||||||*|| targets:495   GUCGGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *=|*|||*|||||||||||||*|| targets:716   CGUUGGCUCACCGGACAGUCCGGU   739 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   CU-AC----CCGCGUGGCCUGUCAGGACA   1   ||-||----||=||||||||||||||*|| targets:756   GAGUGCCCUGGUGCACCGGACAGUCCGGU   784 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *=**|||*|||||||||||||*|| targets:695   CGCUGGCACACCGGACAGUCCGGU   718 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *=|*|||||||||||||||||*|| targets:599   CGUUGGCGCACCGGACAGUCCGGU   622 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   |***|||||||||||||||||*|| targets:503   GCCUGGCGCACCGGACAGUCCGGU   526 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *=|*|||*|||||||||||||*|| targets:694   CGUUGGCUCACCGGACAGUCCGGU   717 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *=|*|||||||||||||||||*|| targets:599   CGUUGGCGCACCGGACAGUCCGGU   622 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   |***|||||||||||||||||*|| targets:503   GCCUGGCGCACCGGACAGUCCGGU   526 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *=|*|||*|||||||||||||*|| targets:694   CGUUGGCUCACCGGACAGUCCGGU   717 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
EU971710.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   ||*|||*|||||||||*||||||| targets:297   GAAGGGGGCACCGGACUGUCCUGU   320 Target Full Sequence	2.5	Zea mays clone 369445 mRNA sequence	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   |**|||=||||||||||||||*|| targets:584   GUCGGGUGCACCGGACAGUCCGGU   607 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *=|*|||*|||||||||||||*|| targets:722   CGUUGGCACACCGGACAGUCCGGU   745 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   ||**|||||||||||||||||*|| targets:489   GAGUGGCGCACCGGACAGUCCGGU   512 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   ||**|||||||||||||||||*|| targets:489   GAGUGGCGCACCGGACAGUCCGGU   512 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   |**|||=||||||||||||||*|| targets:136   GUCGGGUGCACCGGACAGUCCGGU   159 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   ||**|||||||||||||||||*|| targets:2538   GACUGGCGCACCGGACAGUCCGGU   2561 Target Full Sequence	1.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *=|*|||*|||||||||||||*|| targets:2749   CGUUGGCUCACCGGACAGUCCGGU   2772 Target Full Sequence	2.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
EZ065990.1	ncRNA:21   CCCGCGUGGCCUGUCAGGACA   1   *|||||||||||||||||*|| targets:1   UGGCGCACCGGACAGUCCGGU   21 Target Full Sequence	1.5	TSA: Zea mays contig01624, mRNA sequence	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   |***|||||||||||||||||*|| targets:374   GUCUGGCGCACCGGACAGUCCGGU   397 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *=|*|||*|||||||||||||*|| targets:580   CGUUGGCUCACCGGACAGUCCGGU   603 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
HI410113.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   ||**||=||||||||||||||*|| targets:147   GAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	2.5	Sequence 8238 from Patent EP2074227	NA	coding protein	psRNATarget
JB170574.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   ||**||=||||||||||||||*|| targets:147   GAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	2.5	Sequence 8238 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242243.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   ||**||=||||||||||||||*|| targets:147   GAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	2.5	Sequence 8238 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   ****||=||||||||||||||*|| targets:91   CCCUGGUGCACCGGACAGUCCGGU   114 Target Full Sequence	2.5	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *|**|||*|||||||||||||*|| targets:10   CACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	2.5	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   ****||=||||||||||||||*|| targets:91   CCCUGGUGCACCGGACAGUCCGGU   114 Target Full Sequence	2.5	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *|**|||*|||||||||||||*|| targets:10   CACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	2.5	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   ****||=||||||||||||||*|| targets:91   CCCUGGUGCACCGGACAGUCCGGU   114 Target Full Sequence	2.5	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *|**|||*|||||||||||||*|| targets:10   CACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	2.5	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
BT068871.2	ncRNA:24   CU-AC--CCGCGUGGCCUGUCAGGACA   1   ||-||--|||*|||||||||||||*|| targets:684   GACUGUUGGCUCACCGGACAGUCCGGU   710 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:24   CU-AC--CCGCGUGGCCUGUCAGGACA   1   ||-||--|||*|||||||||||||*|| targets:684   GACUGUUGGCUCACCGGACAGUCCGGU   710 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *=|*|||*|||||||||||||*|| targets:705   CGUUGGCUCACCGGACAGUCCGGU   728 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   CUACCCGCGUGGCCUGUCAGGACA   1   *=|*|||*|||||||||||||*|| targets:389   CGUUGGCUCACCGGACAGUCCGGU   412 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget