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BaseInfo

ncRNA ID	osa-miR5500
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:27731022-27731109 [+]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	56 - AUCACUGAUGAAAUCUUGCGGC - 77
Stem-loop(if miRNA)	A       CCU   -    UC  --      C     AUUAA     A  GGAUACG   GCC CCGC  GA  UUAUCA UGAUG     UUUUC A  |||||||   ||| ||||  ||  |||||| |||||     |||||  CCUGUGU   CGG GGCG  CU  AGUAGU ACUAU     AGAAG A -       --U   C    UU  AA      C     ----A     A
Stem-loop sequence	AGGAUACGCCUGCCCCGCUCGAUUAUCACUGAUGAUUAAUUUUCAAAAGAAGAAUAUCACUGAUGAAAUCUUGCGGCGGCUUGUGUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK107126.1	ncRNA:22   CGGCGUUCUAAAGUAGUCACUA   1   |*=*||||||*||||||||||| targets:1039   GAUCCAAGAUGUCAUCAGUGAU   1060 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-124-B11, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011).