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BaseInfo

ncRNA ID	novel_zma_miR1104
Species	Zea mays
Class	miRNA
Genome position	Chr2:229195982-229196078 [+]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647467
Length	24
Mature sequence(if miRNA)	74 - UCUAAUUUUAUCUCCAAUUACUGG - 97
Stem-loop(if miRNA)	--  -   G     G     ACAGGGG    GUA AGAGAAAAGAGGAAUUAC   AG AAU GGGGA AAGAU       GUGA   C                  A   || ||| ||||| |||||       ||||   |   UC UUA CCUCU UUUUA       CUUG   U                  G GG  A   A     A     -----AU    --- ACCGAAGAAAUAAGACAA
Stem-loop sequence	AGAAUGGGGGAGAAGAUACAGGGGGUGAGUACAGAGAAAAGAGGAAUUACAGAACAGAAUAAAGAAGCCAUGUUCUAAUUUUAUCUCCAAUUACUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020543827.1	ncRNA:24   GGUCAUUAACCUCUAUUUUAAUCU   1   ||||-||||*|||||||||*|||| targets:877   CCAG-AAUUUGAGAUAAAAAUAGA   899 Target Full Sequence	2.5	PREDICTED: Zea mays programmed cell death protein 2-like (LOC103639246), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008656457.2	ncRNA:24   GGUCAUUAACCUCUAUUUUAAUCU   1   ||||-||||*|||||||||*|||| targets:920   CCAG-AAUUUGAGAUAAAAAUAGA   942 Target Full Sequence	2.5	PREDICTED: Zea mays programmed cell death protein 2 (LOC103634523), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008656453.2	ncRNA:24   GGUCAUUAACCUCUAUUUUAAUCU   1   ||||-||||*|||||||||*|||| targets:921   CCAG-AAUUUGAGAUAAAAAUAGA   943 Target Full Sequence	2.5	PREDICTED: Zea mays programmed cell death protein 2 (LOC103634523), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008656449.2	ncRNA:24   GGUCAUUAACCUCUAUUUUAAUCU   1   ||||-||||*|||||||||*|||| targets:919   CCAG-AAUUUGAGAUAAAAAUAGA   941 Target Full Sequence	2.5	PREDICTED: Zea mays programmed cell death protein 2 (LOC103634523), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543826.1	ncRNA:24   GGUCAUUAACCUCUAUUUUAAUCU   1   ||||-||||*|||||||||*|||| targets:876   CCAG-AAUUUGAGAUAAAAAUAGA   898 Target Full Sequence	2.5	PREDICTED: Zea mays programmed cell death protein 2-like (LOC103639246), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU963562.1	ncRNA:24   GGUCAUUAACCUCUAUUUUAAUCU   1   ||||-||||*|||||||||*|||| targets:864   CCAG-AAUUUGAGAUAAAAAUAGA   886 Target Full Sequence	2.5	Zea mays clone 264064 programmed cell death protein 2 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156043.1	ncRNA:24   GGUCAUUAACCUCUAUUUUAAUCU   1   ||||-||||*|||||||||*|||| targets:864   CCAG-AAUUUGAGAUAAAAAUAGA   886 Target Full Sequence	2.5	Zea mays programmed cell death protein 2 (LOC100283141), mRNA	NA	coding protein	psRNATarget
NM_001301594.1	ncRNA:24   GGUCAUUAACCUCUAUUUUAAUCU   1   ||||-||||*|||||||||*|||| targets:797   CCAG-AAUUUGAGAUAAAAAUAGA   819 Target Full Sequence	2.5	Zea mays programmed cell death protein 2-like (LOC103639246), mRNA	NA	coding protein	psRNATarget
BT037257.1	ncRNA:24   GGUCAUUAACCUCUAUUUUAAUCU   1   ||||-||||*|||||||||*|||| targets:797   CCAG-AAUUUGAGAUAAAAAUAGA   819 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0160J01 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543825.1	ncRNA:24   GGUCAUUAACCUCUAUUUUAAUCU   1   ||||-||||*|||||||||*|||| targets:859   CCAG-AAUUUGAGAUAAAAAUAGA   881 Target Full Sequence	2.5	PREDICTED: Zea mays programmed cell death protein 2-like (LOC103639246), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT055405.1	ncRNA:24   GGUCAUUAACCUCUAUUUUAAUCU   1   ||||-||||*|||||||||*|||| targets:403   CCAG-AAUUUGAGAUAAAAAUAGA   425 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0143K24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546652.1	ncRNA:24   GGUCAUUAACCUCUAUUUUAAUCU   1   ||||-||||*|||||||||*|||| targets:383   CCAG-AAUUUGAGAUAAAAAUAGA   405 Target Full Sequence	2.5	PREDICTED: Zea mays programmed cell death protein 2-like (LOC103645207), mRNA	NA	coding protein	psRNATarget
AY103904.1	ncRNA:24   GGUCAUUAACCUCUAUUUUAAUCU   1   ||||-||||*|||||||||*|||| targets:405   CCAG-AAUUUGAGAUAAAAAUAGA   427 Target Full Sequence	2.5	Zea mays PCO132990 mRNA sequence	NA	coding protein	psRNATarget
XM_020550694.1	ncRNA:24   GGUCAUUAACCUCUAUUUUAAUCU   1   ||||-||||*|||||||||*|||| targets:253   CCAG-AAUUUGAGAUAAAAAUAGA   275 Target Full Sequence	2.5	PREDICTED: Zea mays programmed cell death protein 2-like (LOC109944947), mRNA	NA	coding protein	psRNATarget
XM_008676802.1	ncRNA:24   GGUCAUUAACCUCUAUUUUAAUCU   1   *=||-||||*|||||||=|||||| targets:1968   AUAG-AAUUAGAGAUAAGAUUAGA   1990 Target Full Sequence	2.5	PREDICTED: Zea mays mucin-5AC-like (LOC103651186), mRNA	NA	coding protein	psRNATarget