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BaseInfo

ncRNA ID	novel_zma_miR1097
Species	Zea mays
Class	miRNA
Genome position	Chr5:11326416-11326601 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089712;SRR2089713;SRR2089714;SRR2089704;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - AGGGGGUGUUUGGUUUCUAAGGAC - 24
Stem-loop(if miRNA)	--                   A                             C       U          G C          CUA           AGGGGGUGUUUGGUUUCUA GGACUAAUUUUUAGUCCCUCCAUUUUAUU CAUUUUA UUCCUAAAUU C AAAUACGGAA   ACUAAAAUA   ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| | ||||||||||   ||||||||G   UCCCCCACAAAUCAAAGAU CCUGAUUAAAAAUCAGGGAGGUAAAAUAA GUAAAAU AGGGAUUUAA G UUUAUGCCUU   UGAUUUUGA AU                   C                             U       U          A A          ---
Stem-loop sequence	AGGGGGUGUUUGGUUUCUAAGGACUAAUUUUUAGUCCCUCCAUUUUAUUCCAUUUUAUUUCCUAAAUUGCCAAAUACGGAACUAACUAAAAUAGAGUUUUAGUUUCCGUAUUUAGAAAUUUAGGGAUUAAAAUGUAAUAAAAUGGAGGGACUAAAAAUUAGUCCCUAGAAACUAAACACCCCCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020543841.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||||||||||||||||||| targets:1071   GUCCCUAGAAACCAAACACCCCCU   1094 Target Full Sequence	0.0	PREDICTED: Zea mays lo1 pI allergen homolog 1 (lop1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT065747.2	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||||||||||||||||||| targets:916   GUCCCUAGAAACCAAACACCCCCU   939 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds	NA	coding protein	psRNATarget
EU957896.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   |||*|||||||||||||||||||| targets:1395   GUCGUUAGAAACCAAACACCCCCU   1418 Target Full Sequence	0.0	Zea mays clone 1630391 mRNA sequence	NA	coding protein	psRNATarget
XM_008674147.2	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||||||||||||||||||| targets:29   GUCCCUAGAAACCAAACACCCCCU   52 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100272682 (TIDP2766), transcript variant X8, mRNA	NA	coding protein	psRNATarget
NM_001152323.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||||||||||||||||||| targets:2086   GUCCCUAGAAACCAAACACCCCCU   2109 Target Full Sequence	0.0	Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA	NA	coding protein	psRNATarget
BT053999.2	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||||||||||||||||||| targets:2086   GUCCCUAGAAACCAAACACCCCCU   2109 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*|||||||||||||||||=| targets:1250   GUCCCUAGAAACCAAACACCCCUU   1273 Target Full Sequence	1.5	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
NM_001156492.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*|||||||||||||||||*| targets:1316   GUCCCUAGAAACCAAACACCCCYU   1339 Target Full Sequence	1.5	Zea mays protein COQ10 A (LOC100283591), mRNA	NA	coding protein	psRNATarget
EU965238.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*|||||||||||||||||*| targets:1316   GUCCCUAGAAACCAAACACCCCYU   1339 Target Full Sequence	1.5	Zea mays clone 284715 protein COQ10 A mRNA, complete cds	NA	coding protein	psRNATarget
EU967664.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*|||||||||||||||||=| targets:1250   GUCCCUAGAAACCAAACACCCCUU   1273 Target Full Sequence	1.5	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153051.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   |||=*||||||||||||||||||| targets:939   GUCUCUAGAAACCAAACACCCCCU   962 Target Full Sequence	0.0	Zea mays NAD(P)-binding Rossmann-fold superfamily protein (LOC100280114), mRNA	NA	coding protein	psRNATarget
BT055601.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   |||=*||||||||||||||||||| targets:939   GUCUCUAGAAACCAAACACCCCCU   962 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0063A22 mRNA, complete cds	NA	coding protein	psRNATarget
BT083492.2	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*|||||||=||||||||||| targets:801   GUCCCUAGAAACUAAACACCCCCU   824 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0003B18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546554.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*|||||||||||||||||=| targets:40   GUCCCUAGAAACCAAACACCCCUU   63 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943471 (LOC109943471), mRNA	NA	coding protein	psRNATarget
XM_020548275.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||||||||||||=|||||| targets:2166   GUCCCUAGAAACCAAACGCCCCCU   2189 Target Full Sequence	1.5	PREDICTED: Zea mays putative pentatricopeptide repeat-containing protein At1g09680 (LOC103648586), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT038994.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||*|||||||=||||||||=|||| targets:1245   GUACUUAGAAGCCAAACACUCCCU   1268 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0348D04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147048.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||*|||||||=||||||||=|||| targets:1245   GUACUUAGAAGCCAAACACUCCCU   1268 Target Full Sequence	2.5	Zea mays Nudix hydrolase 23 chloroplastic (LOC100272585), mRNA	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||*|||||||||||||||| targets:294   GUCCAUAUAAACCAAACACCCCCU   317 Target Full Sequence	1.0	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||*|||||||||||||||| targets:294   GUCCAUAUAAACCAAACACCCCCU   317 Target Full Sequence	1.0	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||*|||||||||||||||| targets:294   GUCCAUAUAAACCAAACACCCCCU   317 Target Full Sequence	1.0	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020553397.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||*|||||||||||||||| targets:704   GUCCCUACAAACCAAACACCCCCU   727 Target Full Sequence	1.0	PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008680551.2	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   |||**||||||||||||||||||| targets:963   GUCACUAGAAACCAAACACCCCCU   986 Target Full Sequence	0.0	PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542840.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||*|||||||||||||||| targets:1124   GUCCCUACAAACCAAACACCCCCU   1147 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674294.2	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||*|||||||||||||||| targets:22   GUCCCUAAAAACCAAACACCCCCU   45 Target Full Sequence	1.0	PREDICTED: Zea mays OSJNBa0059D20.8-like protein (LOC100274149), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674295.2	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||*|||||||||||||||| targets:22   GUCCCUAAAAACCAAACACCCCCU   45 Target Full Sequence	1.0	PREDICTED: Zea mays OSJNBa0059D20.8-like protein (LOC100274149), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT085047.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||*|||||||||||||||| targets:1345   GUCCCUAUAAACCAAACACCCCCU   1368 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||*|||||||||||||||| targets:419   GUCCAUAUAAACCAAACACCCCCU   442 Target Full Sequence	1.0	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
XM_008676281.2	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||*|||||||||||||||| targets:44   GUCCCUACAAACCAAACACCCCCU   67 Target Full Sequence	1.0	PREDICTED: Zea mays U-box domain-containing protein 14 (LOC103650716), mRNA	NA	coding protein	psRNATarget
XM_020547858.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   |||**||||||||||||||||||| targets:1693   GUCACUAGAAACCAAACACCCCCU   1716 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA	NA	coding protein	psRNATarget
HI406629.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||=|||*|||||||||||||||*| targets:91   GUUCUUUGAAACCAAACACCCCAU   114 Target Full Sequence	2.5	Sequence 4754 from Patent EP2074227	NA	coding protein	psRNATarget
JB167090.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||=|||*|||||||||||||||*| targets:91   GUUCUUUGAAACCAAACACCCCAU   114 Target Full Sequence	2.5	Sequence 4754 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238759.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||=|||*|||||||||||||||*| targets:91   GUUCUUUGAAACCAAACACCCCAU   114 Target Full Sequence	2.5	Sequence 4754 from Patent EP2985353	NA	coding protein	psRNATarget
EZ077632.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||*||||||||||||||=| targets:37   GUCCCUACAAACCAAACACCCCUU   60 Target Full Sequence	2.5	TSA: Zea mays contig13271, mRNA sequence	NA	coding protein	psRNATarget
EZ060524.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||*|||||||||||=|||| targets:196   GUCCCUAUAAACCAAACACUCCCU   219 Target Full Sequence	2.5	TSA: Zea mays contig61646, mRNA sequence	NA	coding protein	psRNATarget
NM_001143572.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||*|||||=|||||||||| targets:987   GUCCCUAUAAACCGAACACCCCCU   1010 Target Full Sequence	2.5	Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), mRNA	NA	coding protein	psRNATarget
BT038140.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||*|||||=|||||||||| targets:987   GUCCCUAUAAACCGAACACCCCCU   1010 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0213P07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151347.2	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||*||||||||||||||=| targets:52   GUCCCUAUAAACCAAACACCCCUU   75 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100277899), mRNA	NA	coding protein	psRNATarget
XM_008683103.2	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||*|||||=|||||||||| targets:2986   GUCCCUAUAAACCGAACACCCCCU   3009 Target Full Sequence	2.5	PREDICTED: Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547055.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||*|||||||||||=|||| targets:433   GUCCCUAAAAACCAAACACUCCCU   456 Target Full Sequence	2.5	PREDICTED: Zea mays myosin-6 (LOC103644344), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020547054.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||*|||||||||||=|||| targets:435   GUCCCUAAAAACCAAACACUCCCU   458 Target Full Sequence	2.5	PREDICTED: Zea mays myosin-6 (LOC103644344), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EZ052038.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   *|||*||*||||||||||=||||| targets:326   AUCCCUAUAAACCAAACAUCCCCU   349 Target Full Sequence	2.5	TSA: Zea mays contig53158, mRNA sequence	NA	coding protein	psRNATarget
EZ068389.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*||*||||||||||||||*| targets:170   GUCCCUAAAAACCAAACACCCCAU   193 Target Full Sequence	2.5	TSA: Zea mays contig04024, mRNA sequence	NA	coding protein	psRNATarget
XM_020542516.1	ncRNA:24   CAGGAAUCUUUGGUUUGUGGGGGA   1   ||||*|**|||||||||||||||| targets:38   GUCCCUCUAAACCAAACACCCCCU   61 Target Full Sequence	2.0	PREDICTED: Zea mays NAC domain-containing protein 35 (LOC103634916), transcript variant X6, mRNA	NA	coding protein	psRNATarget