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BaseInfo

ncRNA ID	novel_zma_miR1093
Species	Zea mays
Class	miRNA
Genome position	Chr4:10215916-10216039 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2287164
Length	21
Mature sequence(if miRNA)	104 - UUGUGGGGGGCUGCAAACAUU - 124
Stem-loop(if miRNA)	--                          G       CACCCAUAGCAGCAAUAACACAACUAAAA   UAUCUGA   UGUUUGCAGUCCCUCACAAAAAGGAA AUAGACC                             CAU       U   |||||||||||||||||||||||||| |||||||                             |||       G   ACAAACGUCGGGGGGUGUUUUUUCUU UAUCUGG                             UGG       G UU                          A       ---------------------------AA   ACAUCCA
Stem-loop sequence	UGUUUGCAGUCCCUCACAAAAAGGAAGAUAGACCCACCCAUAGCAGCAAUAACACAACUAAAACAUUAUCUGAUGGACCUACAGGUAAGGUCUAUAUUCUUUUUUGUGGGGGGCUGCAAACAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235348.1	ncRNA:21   UUACAAACGUCGGGGGGUGUU   1   =*|||||||||||||=||||| targets:10   GCUGUUUGCAGCCCCUCACAA   30 Target Full Sequence	1.5	Sequence 1343 from Patent EP2985353	NA	coding protein	psRNATarget
JB163689.1	ncRNA:21   UUACAAACGUCGGGGGGUGUU   1   =*|||||||||||||=||||| targets:10   GCUGUUUGCAGCCCCUCACAA   30 Target Full Sequence	1.5	Sequence 1353 from Patent EP2559767	NA	coding protein	psRNATarget
HI403228.1	ncRNA:21   UUACAAACGUCGGGGGGUGUU   1   =*|||||||||||||=||||| targets:10   GCUGUUUGCAGCCCCUCACAA   30 Target Full Sequence	1.5	Sequence 1353 from Patent EP2074227	NA	coding protein	psRNATarget
JB163679.1	ncRNA:21   UUACAAACGUCGGGGGGUGUU   1   =*|||||||||||||=||||| targets:10   GCUGUUUGCAGCCCCUCACAA   30 Target Full Sequence	1.5	Sequence 1343 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235358.1	ncRNA:21   UUACAAACGUCGGGGGGUGUU   1   =*|||||||||||||=||||| targets:10   GCUGUUUGCAGCCCCUCACAA   30 Target Full Sequence	1.5	Sequence 1353 from Patent EP2985353	NA	coding protein	psRNATarget
HI403218.1	ncRNA:21   UUACAAACGUCGGGGGGUGUU   1   =*|||||||||||||=||||| targets:10   GCUGUUUGCAGCCCCUCACAA   30 Target Full Sequence	1.5	Sequence 1343 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008653247.2	ncRNA:21   UUACAAACGUCGGGGGGUGUU   1   =*|||||||||||||=||||| targets:25   GCUGUUUGCAGCCCCUCACAA   45 Target Full Sequence	1.5	PREDICTED: Zea mays 50S ribosomal protein L18 (LOC103631773), mRNA	NA	coding protein	psRNATarget
XM_020547144.1	ncRNA:21   UUACAAACGUCGGGGGGUGUU   1   =*|||||||||||||=||||| targets:142   GCUGUUUGCAGCCCCUCACAA   162 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103636662 (LOC103636662), mRNA	NA	coding protein	psRNATarget
XM_020545800.1	ncRNA:21   UUACAAACGUCGGGGGGUGUU   1   =**||||||||||||=||||| targets:870   GCCGUUUGCAGCCCCUCACAA   890 Target Full Sequence	2.5	PREDICTED: Zea mays embryo sac development arrest 6 (LOC103641842), mRNA	NA	coding protein	psRNATarget