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BaseInfo

ncRNA ID	novel_zma_miR1088
Species	Zea mays
Class	miRNA
Genome position	Chr4:71987140-71987248 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089713;SRR1997865;SRR2089700;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - AGUGAGGAGUGAAAAGAAGAUGGA - 24
Stem-loop(if miRNA)	--            A    A       C C       C             A  A   AGUGAGGAGUGA AAGA GAUGGAU A UUCAUUC UCAAACCAAACAC CU U   |||||||||||| |||| ||||||| | ||||||| ||||||||||||| ||   UCACUCCUCACU UUCU CUACCUG U GAGUAAG AGUUUGGUUUGUG GG U UA            C    A       A C       U             -  A
Stem-loop sequence	AGUGAGGAGUGAAAAGAAGAUGGAUCACUUCAUUCCUCAAACCAAACACACUAUUAGGGUGUUUGGUUUGAUGAAUGAGCUAGUCCAUCAUCUUCUCACUCCUCACUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT068835.1	ncRNA:24   AGGUAGAAGAAAAGUGAGGAGUGA   1   |||||||||||*|||||||||||| targets:1154   UCCAUCUUCUUCUCACUCCUCACU   1177 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0086D12 mRNA, complete cds	NA	coding protein	psRNATarget
BT035296.1	ncRNA:24   AGGUAGAAGAAAAGUGAGGAGUGA   1   |||||||||||*|||||||||||| targets:1146   UCCAUCUUCUUCUCACUCCUCACU   1169 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0053K15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138281.1	ncRNA:24   AGGUAGAAGAAAAGUGAGGAGUGA   1   |||||||||||*|||||||||||| targets:1146   UCCAUCUUCUUCUCACUCCUCACU   1169 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100193120), mRNA	NA	coding protein	psRNATarget
XM_008668926.1	ncRNA:24   AGGUAGAAGAAAAGUGAGGAGUGA   1   |||||||||||*|||||||||||| targets:1147   UCCAUCUUCUUCUCACUCCUCACU   1170 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100193120), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT088056.1	ncRNA:24   AGGUAGAAGAAAAGUGAGGAGUGA   1   |||||||||||*|||||||||||| targets:1272   UCCAUCUUCUUCUCACUCCUCACU   1295 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0381E20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656331.1	ncRNA:24   AGGUAGAAGAAAAGUGAGGAGUGA   1   |||||||||||*|||||||||||| targets:1821   UCCAUCUUCUUCUCACUCCUCACU   1844 Target Full Sequence	1.5	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100272998), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008656330.2	ncRNA:24   AGGUAGAAGAAAAGUGAGGAGUGA   1   |||||||||||*|||||||||||| targets:1792   UCCAUCUUCUUCUCACUCCUCACU   1815 Target Full Sequence	1.5	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100272998), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT018820.1	ncRNA:24   AGGUAGAAGAAAAGUGAGGAGUGA   1   |||||||||||*|||||||||||* targets:334   UCCAUCUUCUUCUCACUCCUCACA   357 Target Full Sequence	2.5	Zea mays clone EL01N0532C04.d mRNA sequence	NA	coding protein	psRNATarget
BT068564.1	ncRNA:24   AGGUAGAAGAAAAGUGAGGAGUGA   1   ||||||*||||*|||||||||||| targets:75   UCCAUCGUCUUCUCACUCCUCACU   98 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0327N20 mRNA, complete cds	NA	coding protein	psRNATarget
EU971252.1	ncRNA:24   AGGUAGAAGAAAAGUGAGGAGUGA   1   |==|||*||||||||||||||=|| targets:398   UUUAUCGUCUUUUCACUCCUCGCU   421 Target Full Sequence	2.5	Zea mays clone 360410 mRNA sequence	NA	coding protein	psRNATarget
XM_020547325.1	ncRNA:24   AGGUAGAAGAAAAGUGAGGAGUGA   1   ||||||*||||*|||||||||||| targets:1054   UCCAUCAUCUUCUCACUCCUCACU   1077 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor MYB31 (myb31), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547324.1	ncRNA:24   AGGUAGAAGAAAAGUGAGGAGUGA   1   ||||||*||||*|||||||||||| targets:1055   UCCAUCAUCUUCUCACUCCUCACU   1078 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor MYB31 (myb31), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY105628.1	ncRNA:24   AGGUAGAAGAAAAGUGAGGAGUGA   1   ||=|||*||||*|||||||||||| targets:677   UCUAUCAUCUUCUCACUCCUCACU   700 Target Full Sequence	2.5	Zea mays PCO108049 mRNA sequence	NA	coding protein	psRNATarget
XM_020546133.1	ncRNA:24   AGGUAGAAGAAAAGUGAGGAGUGA   1   ||=|||*||||*|||||||||||| targets:570   UCUAUCAUCUUCUCACUCCUCACU   593 Target Full Sequence	2.5	PREDICTED: Zea mays ubiquitin-activating enzyme E1 3 (LOC103634508), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU949478.1	ncRNA:24   AGGUAGAAGAAAAGUGAGGAGUGA   1   ||=*||*||||*|||||||||||| targets:199   UCUCUCGUCUUCUCACUCCUCACU   222 Target Full Sequence	2.5	Zea mays clone 416401 mRNA sequence	NA	coding protein	psRNATarget