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BaseInfo

ncRNA ID	novel_zma_miR1086
Species	Zea mays
Class	miRNA
Genome position	Chr10:46590853-46590914 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089706;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - GGGAUUGGAAGGGAUUGAGGGGGA - 24
Stem-loop(if miRNA)	--         A                 UA   GGGAUUGGA GGGAUUGAGGGGGAAAU  G   ||||||||| |||||||||||||||||   UCCUAACCU CCCUAACUCCCCCUUUA  U CC         C                 CU
Stem-loop sequence	GGGAUUGGAAGGGAUUGAGGGGGAAAUUAGUUCAUUUCCCCCUCAAUCCCCUCCAAUCCUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403493.1	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   ||||||||||||||*||||||||= targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	2.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   ||||||||||||||*||||||||= targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	2.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   ||||||||||||||*||||||||= targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	2.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
EZ083462.1	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   |||=|=*||||||||||||||||| targets:23   UCCUCUCCAAUCCCUUCCAAUCCC   46 Target Full Sequence	2.0	TSA: Zea mays contig19106, mRNA sequence	NA	coding protein	psRNATarget
BT038305.1	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   |||*=|||||||||||=||||||| targets:611   UCCAUCUCAAUCCCUUUCAAUCCC   634 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0224P03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541843.1	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   |||*=|||||||||||=||||||| targets:1616   UCCAUCUCAAUCCCUUUCAAUCCC   1639 Target Full Sequence	1.5	PREDICTED: Zea mays putative actin family protein (LOC100191561), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   |=|=||||||||||*||||||||= targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	2.5	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
HI403355.1	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   |=|=||||||||||*||||||||= targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	2.5	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
JB163816.1	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   |=|=||||||||||*||||||||= targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	2.5	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
EU976682.1	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   |=|*=||=|||||||||||||||| targets:707   UUCAUCUUAAUCCCUUCCAAUCCC   730 Target Full Sequence	1.0	Zea mays clone 987107 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU968273.1	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   |=|*=||=|||||||||||||||| targets:774   UUCAUCUUAAUCCCUUCCAAUCCC   797 Target Full Sequence	1.0	Zea mays clone 318071 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   ||=|=|||||||||*||||||||= targets:1463   UCUCUCUCAAUCCCCUCCAAUCCU   1486 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
HI403290.1	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   ||=|*|||||||||*||||||||| targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93 Target Full Sequence	1.5	Sequence 1415 from Patent EP2074227	NA	coding protein	psRNATarget
JB163751.1	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   ||=|*|||||||||*||||||||| targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93 Target Full Sequence	1.5	Sequence 1415 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235420.1	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   ||=|*|||||||||*||||||||| targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93 Target Full Sequence	1.5	Sequence 1415 from Patent EP2985353	NA	coding protein	psRNATarget
EZ071161.1	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   ||=*|||||||||||||||||*|| targets:88   UCUACCUCAAUCCCUUCCAAUACC   111 Target Full Sequence	1.5	TSA: Zea mays contig06798, mRNA sequence	NA	coding protein	psRNATarget
EU950950.1	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   *|||*||||||=|||||||||||* targets:565   ACCCACUCAAUUCCUUCCAAUCCA   588 Target Full Sequence	2.5	Zea mays clone 676962 mRNA sequence	NA	coding protein	psRNATarget
NM_001155652.1	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   *|||*||||||=|||||||||||* targets:1302   ACCCACUCAAUUCCUUCCAAUCCA   1325 Target Full Sequence	2.5	Zea mays mitochondrial uncoupling protein 2 (LOC100282746), mRNA	NA	coding protein	psRNATarget
EU962164.1	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   *|||*||||||=|||||||||||* targets:1302   ACCCACUCAAUUCCUUCCAAUCCA   1325 Target Full Sequence	2.5	Zea mays clone 240681 mitochondrial uncoupling protein 2 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
XM_008669767.2	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   *|||*||||||=|||||||||||* targets:1385   ACCCACUCAAUUCCUUCCAAUCCA   1408 Target Full Sequence	2.5	PREDICTED: Zea mays mitochondrial uncoupling protein 2 (LOC100282746), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   |=|*||||||||||*||||||||= targets:75   UUCACCUCAAUCCCCUCCAAUCCU   98 Target Full Sequence	2.5	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   AGGGGGAGUUAGGGAAGGUUAGGG   1   |=|*||||||||||*||||||||= targets:41   UUCACCUCAAUCCCCUCCAAUCCU   64 Target Full Sequence	2.5	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget