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BaseInfo

ncRNA ID novel_zma_miR1080
Species Zea mays
Class miRNA
Genome position Chr4:36530330-36530390 [-]
Reference genome RefGen_v4
Source SRR2089710;SRR2089711;SRR2089712;SRR2089714;SRR2089715;SRR2287162;SRR2089700;SRR2089706;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - UGUAUUUUGGAAUGAGUGGAUGAC - 24
Stem-loop(if miRNA) --     G   G         A    GUCGC
  CGUCC AUU AUUUCGAGG AUGG     G
  ||||| ||| ||||||||| ||||
  GUAGG UGA UAAGGUUUU UGUC     G
CA     -   G         A    AAAUU
Stem-loop sequence CGUCCGAUUGAUUUCGAGGAAUGGGUCGCGGUUAAACUGUAUUUUGGAAUGAGUGGAUGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020550362.1
ncRNA:24   CAGUAGGUGAGUAAGGUUUUAUGU   1
  |||||||||||=||||||||||||
targets:695   GUCAUCCACUCGUUCCAAAAUACA   718

1.5 PREDICTED: Zea mays protein ALP1-like (LOC103650735), mRNA NA coding protein psRNATarget