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BaseInfo

ncRNA ID	osa-miR5532
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:23647854-23648007 [+]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	123 - AUGGAAUAUAUGACAAAGGUGG - 144
Stem-loop(if miRNA)	C    UUU     CUUAAGA     C    A   GG  A    CU   -UUG      UUAUU UAUUAUCUCCUUCGAGGGAUU  CUCU   GGAUU       CCACC UUGU GUA  AU CCGU  GCU    GGUUCU     A                     U  ||||   |||||       ||||| |||| |||  || ||||  |||    ||||||     |  GAGG   UCUGA       GGUGG AACA UAU  UA GGUA  CGG    AUCUGA     U                     U -    --U     -------     A    G   -A  A    -U   UUUU      ----- UUAUAUCGGAUUUGCUAGGAU
Stem-loop sequence	CCUCUUUUGGAUUCUUAAGACCACCCUUGUAGUAGGAUACCGUCUGCUUUGGGUUCUUUAUUAUAUUAUCUCCUUCGAGGGAUUUUUAGGAUCGUUUAGGCUAUAUUUAGUCUAUUUUGGCUAUGGAAUAUAUGACAAAGGUGGAGUCUUGGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK243550.1	ncRNA:22   GGUGGAAACAGUAUAUAAGGUA   1   =|=*||*||||||||||||||| targets:1009   UCGGCUGUGUCAUAUAUUCCAU   1030 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J100079G22, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011).