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BaseInfo

ncRNA ID novel_zma_miR1078
Species Zea mays
Class miRNA
Genome position Chr4:43536909-43537073 [-]
Reference genome RefGen_v4
Source SRR2089710;SRR2287161;SRR2287164
Length 24
Mature sequence(if miRNA) 1 - AAUGGAUUAGAUGGUUUGCUUGCA - 24
Stem-loop(if miRNA) --         A    C           CG         CG   -    CAUUUAACACUUAAACCCUUCCACCACUAGCUUA
  CAAGCAAAU AUCU AUCCAUUAGAU  UGAUCCAAC  UAG GUUA                                  A
  ||||||||| |||| |||||||||||  |||||||||  ||| ||||
  GUUCGUUUG UAGA UAGGUAAUCUA  ACUAGGUUG  AUC AUGU                                  U
AC         G    U           AU         AU   U    UGGUACCAAACAUUUCACAAAAAAAUAUUUUAAA
Stem-loop sequence CAAGCAAAUAAUCUCAUCCAUUAGAUCGUGAUCCAACCGUAGGUUACAUUUAACACUUAAACCCUUCCACCACUAGCUUAAUAAAUUUUAUAAAAAAACACUUUACAAACCAUGGUUGUAUCUAUAGUUGGAUCAUAAUCUAAUGGAUUAGAUGGUUUGCUUGCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235556.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  ||||||||||||||||=|||||||
targets:27   UGCAAGCAAACCAUCUGAUCCAUU   50

1.5 Sequence 1551 from Patent EP2985353 NA coding protein psRNATarget
JB163887.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  ||||||||||||||||=|||||||
targets:27   UGCAAGCAAACCAUCUGAUCCAUU   50

1.5 Sequence 1551 from Patent EP2559767 NA coding protein psRNATarget
HI403426.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  ||||||||||||||||=|||||||
targets:27   UGCAAGCAAACCAUCUGAUCCAUU   50

1.5 Sequence 1551 from Patent EP2074227 NA coding protein psRNATarget
HI403456.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  ||||||||||||||||=|||||||
targets:29   UGCAAGCAAACCAUCUGAUCCAUU   52

1.5 Sequence 1581 from Patent EP2074227 NA coding protein psRNATarget
JB163917.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  ||||||||||||||||=|||||||
targets:29   UGCAAGCAAACCAUCUGAUCCAUU   52

1.5 Sequence 1581 from Patent EP2559767 NA coding protein psRNATarget
LQ235586.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  ||||||||||||||||=|||||||
targets:29   UGCAAGCAAACCAUCUGAUCCAUU   52

1.5 Sequence 1581 from Patent EP2985353 NA coding protein psRNATarget
XM_020538741.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  ||||||||||||||||=|||||||
targets:829   UGCAAGCAAACCAUCUGAUCCAUU   852

1.5 PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008648194.2
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  ||||||||||||||||=|||||||
targets:829   UGCAAGCAAACCAUCUGAUCCAUU   852

1.5 PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X1, mRNA NA coding protein psRNATarget
HI402939.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  ||=|||||||||||||=|||||||
targets:28   UGUAAGCAAACCAUCUGAUCCAUU   51

1.5 Sequence 1064 from Patent EP2074227 NA coding protein psRNATarget
LQ235069.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  ||=|||||||||||||=|||||||
targets:28   UGUAAGCAAACCAUCUGAUCCAUU   51

1.5 Sequence 1064 from Patent EP2985353 NA coding protein psRNATarget
JB163400.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  ||=|||||||||||||=|||||||
targets:28   UGUAAGCAAACCAUCUGAUCCAUU   51

1.5 Sequence 1064 from Patent EP2559767 NA coding protein psRNATarget
LQ235247.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  ||=|||||||||||||=|||||||
targets:28   UGUAAGCAAACCAUCUGAUCCAUU   51

1.5 Sequence 1242 from Patent EP2985353 NA coding protein psRNATarget
HI403117.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  ||=|||||||||||||=|||||||
targets:28   UGUAAGCAAACCAUCUGAUCCAUU   51

1.5 Sequence 1242 from Patent EP2074227 NA coding protein psRNATarget
JB163578.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  ||=|||||||||||||=|||||||
targets:28   UGUAAGCAAACCAUCUGAUCCAUU   51

1.5 Sequence 1242 from Patent EP2559767 NA coding protein psRNATarget
LQ235525.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  |*||||||||||||||||||||||
targets:28   UACAAGCAAACCAUCUAAUCCAUU   51

0.0 Sequence 1520 from Patent EP2985353 NA coding protein psRNATarget
JB163856.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  |*||||||||||||||||||||||
targets:28   UACAAGCAAACCAUCUAAUCCAUU   51

0.0 Sequence 1520 from Patent EP2559767 NA coding protein psRNATarget
HI403395.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  |*||||||||||||||||||||||
targets:28   UACAAGCAAACCAUCUAAUCCAUU   51

0.0 Sequence 1520 from Patent EP2074227 NA coding protein psRNATarget
HI403147.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  |||||||||*||||||=|||||||
targets:28   UGCAAGCAAUCCAUCUGAUCCAUU   51

2.5 Sequence 1272 from Patent EP2074227 NA coding protein psRNATarget
JB163608.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  |||||||||*||||||=|||||||
targets:28   UGCAAGCAAUCCAUCUGAUCCAUU   51

2.5 Sequence 1272 from Patent EP2559767 NA coding protein psRNATarget
LQ235277.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  |||||||||*||||||=|||||||
targets:28   UGCAAGCAAUCCAUCUGAUCCAUU   51

2.5 Sequence 1272 from Patent EP2985353 NA coding protein psRNATarget
LQ241182.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  ||||||||||=|||||*|||||||
targets:36   UGCAAGCAAAUCAUCUCAUCCAUU   59

2.5 Sequence 7177 from Patent EP2985353 NA coding protein psRNATarget
JB169513.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  ||||||||||=|||||*|||||||
targets:36   UGCAAGCAAAUCAUCUCAUCCAUU   59

2.5 Sequence 7177 from Patent EP2559767 NA coding protein psRNATarget
HI409052.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  ||||||||||=|||||*|||||||
targets:36   UGCAAGCAAAUCAUCUCAUCCAUU   59

2.5 Sequence 7177 from Patent EP2074227 NA coding protein psRNATarget
XM_020548736.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  |||||*=|||||||||||||||||
targets:1681   UGCAAAUAAACCAUCUAAUCCAUU   1704

2.0 PREDICTED: Zea mays uncharacterized LOC103648255 (LOC103648255), mRNA NA coding protein psRNATarget
EU972964.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  ||||||||||=|||||*|||||||
targets:2061   UGCAAGCAAAUCAUCUCAUCCAUU   2084

2.5 Zea mays clone 390894 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001151629.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  ||||||||||=|||||*|||||||
targets:2061   UGCAAGCAAAUCAUCUCAUCCAUU   2084

2.5 Zea mays uncharacterized LOC100278316 (si946092e03), mRNA NA coding protein psRNATarget
LQ235063.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  |*||||=|||||||||=|||||||
targets:36   UACAAGUAAACCAUCUGAUCCAUU   59

2.5 Sequence 1058 from Patent EP2985353 NA coding protein psRNATarget
HI402933.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  |*||||=|||||||||=|||||||
targets:36   UACAAGUAAACCAUCUGAUCCAUU   59

2.5 Sequence 1058 from Patent EP2074227 NA coding protein psRNATarget
JB163394.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  |*||||=|||||||||=|||||||
targets:36   UACAAGUAAACCAUCUGAUCCAUU   59

2.5 Sequence 1058 from Patent EP2559767 NA coding protein psRNATarget
XM_008679933.2
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  ||*|||||||||||||*|||||||
targets:1655   UGAAAGCAAACCAUCUUAUCCAUU   1678

1.5 PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X3, mRNA NA coding protein psRNATarget
AY108063.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  **|||*||||||*|||||||||||
targets:105   AUCAACCAAACCCUCUAAUCCAUU   128

2.5 Zea mays PCO143084 mRNA sequence NA coding protein psRNATarget
NM_001153314.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  **|||*||||||*|||||||||||
targets:88   AUCAACCAAACCCUCUAAUCCAUU   111

2.5 Zea mays GST6 protein (LOC100280389), mRNA NA coding protein psRNATarget
BT056142.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  **|||*||||||*|||||||||||
targets:88   AUCAACCAAACCCUCUAAUCCAUU   111

2.5 Zea mays full-length cDNA clone ZM_BFb0042E07 mRNA, complete cds NA coding protein psRNATarget
XM_008660044.2
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  **|**|||||||||=|||||||||
targets:1472   CCCCUGCAAACCAUUUAAUCCAUU   1495

1.5 PREDICTED: Zea mays Oxysterol-binding protein-related protein 2A (LOC100273607), transcript variant X1, mRNA NA coding protein psRNATarget
BT041484.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  **|**|||||||||=|||||||||
targets:1401   CCCCUGCAAACCAUUUAAUCCAUU   1424

1.5 Zea mays full-length cDNA clone ZM_BFc0028J09 mRNA, complete cds NA coding protein psRNATarget
NM_001148023.1
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  **|**|||||||||=|||||||||
targets:1401   CCCCUGCAAACCAUUUAAUCCAUU   1424

1.5 Zea mays Oxysterol-binding protein-related protein 2A (LOC100273607), mRNA NA coding protein psRNATarget
XM_008660045.2
ncRNA:24   ACGUUCGUUUGGUAGAUUAGGUAA   1
  **|**|||||||||=|||||||||
targets:1475   CCCCUGCAAACCAUUUAAUCCAUU   1498

1.5 PREDICTED: Zea mays Oxysterol-binding protein-related protein 2A (LOC100273607), transcript variant X2, mRNA NA coding protein psRNATarget
EU961379.1
ncRNA:22   GUUCGUUUGGUAGAUUAGGUAA   1
  *||*||||||*|||||||||||
targets:1   AAACCAAACCCUCUAAUCCAUU   22

2.5 Zea mays clone 234938 glutathione S-transferase mRNA, complete cds NA coding protein psRNATarget
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