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BaseInfo

ncRNA ID novel_zma_miR1077
Species Zea mays
Class miRNA
Genome position Chr4:56511832-56511893 [-]
Reference genome RefGen_v4
Source SRR2089710;SRR2089712;SRR1997865;SRR2089698;SRR2089704;SRR2089707;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - UGGCCGUGGCUUGUGGUAGAUCGG - 24
Stem-loop(if miRNA) --   -       C  -   C     C    GG
  GAU UGCCACA GC GCG GCCGC GGCC  G
  ||| ||||||| || ||| ||||| ||||
  CUA AUGGUGU CG UGC CGGUG CCGG  C
GG   G       U  G   -     -    GC
Stem-loop sequence GAUUGCCACACGCGCGCGCCGCCGGCCGGGCCGGGCCGUGGCCGUGGCUUGUGGUAGAUCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT067810.1
ncRNA:24   GGCUAGAU-GGUGUUCGGUGCCGGU   1
  =**||||=-||||||||||||||||
targets:979   UGUAUCUGGCCACAAGCCACGGCCA   1003

3.0 Zea mays full-length cDNA clone ZM_BFc0166D05 mRNA, complete cds NA coding protein psRNATarget
XM_020551420.1
ncRNA:24   GGCUAGAU-GGUGUUCGGUGCCGGU   1
  =**||||=-||||||||||||||||
targets:1062   UGUAUCUGGCCACAAGCCACGGCCA   1086

3.0 PREDICTED: Zea mays uncharacterized LOC100276194 (LOC100276194), transcript variant X1, mRNA NA coding protein psRNATarget