Search result

BaseInfo

ncRNA ID novel_zma_miR1072
Species Zea mays
Class miRNA
Genome position Chr4:83196346-83196405 [-]
Reference genome RefGen_v4
Source SRR2089710;SRR2089706
Length 24
Mature sequence(if miRNA) 1 - CGUGAGUUCUGAUCCUGGCACGCA - 24
Stem-loop(if miRNA) --U      U   G  UC         AUU
   GUGCUA GAU AG  AUUUAUGUA   G
   |||||| ||| ||  |||||||||   C
   CACGGU CUA UC  UGAGUGCAU   U
ACG      C   G  -U         GUA
Stem-loop sequence UGUGCUAUGAUGAGUCAUUUAUGUAAUUGCUAUGUACGUGAGUUCUGAUCCUGGCACGCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020552874.1
ncRNA:24   ACGCACGGUCCUAGUCUUGAGUGC   1
  ||=||||==||||||||||||||*
targets:823   UGUGUGCUGGGAUCAGAACUCACA   846

3.0 PREDICTED: Zea mays uncharacterized LOC100279003 (LOC100279003), transcript variant X2, mRNA NA coding protein psRNATarget
EU950542.1
ncRNA:24   ACGCACGGUCCUAGUCUUGAGUGC   1
  |*|*||||||||||||||||||=|
targets:141   UACCUGCCAGGAUCAGAACUCAUG   164

1.5 Zea mays clone 497975 mRNA sequence NA coding protein psRNATarget