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BaseInfo

ncRNA ID	osa-miR5809
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:23527607-23527669 [-]
Reference genome	MSU7
Source	miRBase
Length	20
Mature sequence(if miRNA)	6 - UCGUCGCCGGCGACCACAGC - 25
Stem-loop(if miRNA)	GUAAAC   --   A  -A         AGAA       GCU  GGU GC  GCGGCGACG    U       |||  ||| ||  |||||||||    A       CGA  CCA CG  CGCUGCUGC    G -CAACA   CA   G  GC         GGUA
Stem-loop sequence	GUAAACGCUGGUAGCAGCGGCGACGAGAAUAGAUGGCGUCGUCGCCGGCGACCACAGCACAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015786673.1	ncRNA:20   CGACACCAGCGGCCGCUGCU   1   ||*|||||||||||||=||| targets:602   GCGGUGGUCGCCGGCGGCGA   621 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277573 (LOC107277573), mRNA	uncharacterized LOC107277573(LOC107277573)	coding protein	psRNATarget
XM_015760818.1	ncRNA:20   CGACACCAGCGGCCGCUGCU   1   |**||||||||||||||||| targets:2164   GAGGUGGUCGCCGGCGACGA   2183 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107276430 (LOC107276430), mRNA	uncharacterized LOC107276430(LOC107276430)	coding protein	psRNATarget
XM_015769604.1	ncRNA:20   CGACACCAGCGGCCGCUGCU   1   |=*||||||||||||||||= targets:1385   GUGGUGGUCGCCGGCGACGG   1404 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group cytochrome P450 714C3-like (LOC4331202), mRNA	cytochrome P450 714C3-like(LOC4331202)	coding protein	psRNATarget
XM_015793386.1	ncRNA:20   CGACACCAGCGGCCGCUGCU   1   ||*||*|||||||||||||| targets:398   GCCGUCGUCGCCGGCGACGA   417 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group DNA-directed RNA polymerases IV and V subunit 2 (LOC4344774), mRNA	DNA-directed RNA polymerases IV and V subunit 2(LOC4344774)	coding protein	psRNATarget
XM_015773291.1	ncRNA:20   CGACACCAGCGGCCGCUGCU   1   *|*|||||||||||||=||| targets:194   CCGGUGGUCGCCGGCGGCGA   213 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272202 (LOC9272202), mRNA	uncharacterized LOC9272202(LOC9272202)	coding protein	psRNATarget
XM_015772232.1	ncRNA:20   CGACACCAGCGGCCGCUGCU   1   *|||||*|||=||||||||| targets:724   UCUGUGUUCGUCGGCGACGA   743 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group acetolactate synthase small subunit 2, chloroplastic (LOC4329938), transcript variant X1, mRNA	acetolactate synthase small subunit 2, chloroplastic(LOC4329938)	coding protein	psRNATarget
XM_015772233.1	ncRNA:20   CGACACCAGCGGCCGCUGCU   1   *|||||*|||=||||||||| targets:714   UCUGUGUUCGUCGGCGACGA   733 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group acetolactate synthase small subunit 2, chloroplastic (LOC4329938), transcript variant X2, mRNA	acetolactate synthase small subunit 2, chloroplastic(LOC4329938)	coding protein	psRNATarget
XM_015785639.1	ncRNA:20   CGACACCAGCGGCCGCUGCU   1   ||*|||||||*||||||||| targets:2189   GCGGUGGUCGGCGGCGACGA   2208 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group metalloendoproteinase 2-MMP (LOC9270797), transcript variant X1, mRNA	metalloendoproteinase 2-MMP(LOC9270797)	coding protein	psRNATarget
XM_015763397.1	ncRNA:20   CGACACCAGCGGCCGCUGCU   1   ||||**|||||||||||||| targets:529   GCUGGCGUCGCCGGCGACGA   548 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group calmodulin-binding protein 60 A (LOC4352496), transcript variant X1, mRNA	calmodulin-binding protein 60 A(LOC4352496)	coding protein	psRNATarget
XM_015763398.1	ncRNA:20   CGACACCAGCGGCCGCUGCU   1   ||||**|||||||||||||| targets:532   GCUGGCGUCGCCGGCGACGA   551 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group calmodulin-binding protein 60 A (LOC4352496), transcript variant X2, mRNA	calmodulin-binding protein 60 A(LOC4352496)	coding protein	psRNATarget
XM_015760899.1	ncRNA:20   CGACACCAGCGGCCGCUGCU   1   ||*||||||||||||||*|| targets:1616   GCGGUGGUCGCCGGCGAGGA   1635 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4324866 (LOC4324866), mRNA	uncharacterized LOC4324866(LOC4324866)	coding protein	psRNATarget
AK121900.1	ncRNA:20   CGACACCAGCGGCCGCUGCU   1   ||||**|||||||||||||| targets:217   GCUGGCGUCGCCGGCGACGA   236 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033105G16, full insert sequence	NA	coding protein	psRNATarget
CT829460.1	ncRNA:20   CGACACCAGCGGCCGCUGCU   1   ||*||||||||||||||*|| targets:687   GCGGUGGUCGCCGGCGAGGA   706 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN074D01, full insert sequence	NA	coding protein	psRNATarget
AK110996.1	ncRNA:20   CGACACCAGCGGCCGCUGCU   1   |||||*||||*||||||||| targets:722   GCUGUCGUCGGCGGCGACGA   741 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-174-E06, full insert sequence	NA	coding protein	psRNATarget
AK287609.1	ncRNA:20   CGACACCAGCGGCCGCUGCU   1   ||*|||||||*||||||||| targets:617   GCGGUGGUCGGCGGCGACGA   636 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065058I05, full insert sequence	NA	coding protein	psRNATarget
AK068178.1	ncRNA:20   CGACACCAGCGGCCGCUGCU   1   ||*||||||||||||||*|| targets:683   GCGGUGGUCGCCGGCGAGGA   702 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013130C02, full insert sequence	NA	coding protein	psRNATarget
CT836278.1	ncRNA:20   CGACACCAGCGGCCGCUGCU   1   |||*||||*||||||||||| targets:220   GCUAUGGUGGCCGGCGACGA   239 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023K08, full insert sequence	NA	coding protein	psRNATarget
XM_015787181.1	ncRNA:20   CGACACCAGCGGCCGCUGCU   1   |||*||||*||||||||||| targets:220   GCUAUGGUGGCCGGCGACGA   239 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor SPATULA-like (LOC107276693), mRNA	transcription factor SPATULA-like(LOC107276693)	coding protein	psRNATarget
XM_015758076.1	ncRNA:20   CGACACCAGCGGCCGCUGCU   1   ||*||*|||||||||||||| targets:79   GCGGUCGUCGCCGGCGACGA   98 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group cytosolic sulfotransferase 5 (LOC4348233), mRNA	cytosolic sulfotransferase 5(LOC4348233)	coding protein	psRNATarget
AK066828.1	ncRNA:20   CGACACCAGCGGCCGCUGCU   1   ||*||*|||||||||||||| targets:73   GCGGUCGUCGCCGGCGACGA   92 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013075L15, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).