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BaseInfo

ncRNA ID	novel_zma_miR1069
Species	Zea mays
Class	miRNA
Genome position	Chr4:37878750-37878800 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089714;SRR2089715;SRR2287159;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - ACUAUUAGCUAGGUUGUUUGGAUG - 24
Stem-loop(if miRNA)	--AC    A      -   U     U     UAUU GCUAGG UUG UUGGA G     |||| |||||| ||| |||||     AUAA CGAUUU AAU AAUCU U AUCA    C      U   C     C
Stem-loop sequence	ACUAUUAGCUAGGUUGUUUGGAUGUCUCUAACUAAUUUUAGCCAAUAACUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545045.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   |||||||||||=|||||||||||| targets:714   CAUCCAAACAAUCUAGCUAAUAGU   737 Target Full Sequence	1.5	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   ||||||||||*||||||||||||| targets:2004   CAUCCAAACACCCUAGCUAAUAGU   2027 Target Full Sequence	1.0	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU956751.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   |||||||||||=|||||||||||| targets:726   CAUCCAAACAAUCUAGCUAAUAGU   749 Target Full Sequence	1.5	Zea mays clone 1572581 mRNA sequence	NA	coding protein	psRNATarget
XM_020543506.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   |||||||||||=|||||||||||| targets:544   CAUCCAAACAAUCUAGCUAAUAGU   567 Target Full Sequence	1.5	PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100216754), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT041400.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   ||||=||||||||||||||||||| targets:1712   CAUCUAAACAACCUAGCUAAUAGU   1735 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0115C19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147983.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   ||||=||||||||||||||||||| targets:1712   CAUCUAAACAACCUAGCUAAUAGU   1735 Target Full Sequence	0.0	Zea mays zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (LOC100273565), mRNA	NA	coding protein	psRNATarget
XM_020545827.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   |||=||||||==|||||||||||| targets:974   CAUUCAAACAGUCUAGCUAAUAGU   997 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like (LOC103641135), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_008646094.2	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   =|||||||=||=|||||||||||| targets:661   UAUCCAAAUAAUCUAGCUAAUAGU   684 Target Full Sequence	2.5	PREDICTED: Zea mays inactive poly [ADP-ribose] polymerase RCD1 (LOC103625711), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   ||||||||||*||||||||||||| targets:3661   CAUCCAAACACCCUAGCUAAUAGU   3684 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   ||||||||||*||||||||||||| targets:3661   CAUCCAAACACCCUAGCUAAUAGU   3684 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542504.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   ||||||||||*||||||||||||| targets:2392   CAUCCAAACACCCUAGCUAAUAGU   2415 Target Full Sequence	1.0	PREDICTED: Zea mays B3 domain-containing protein Os03g0120900 (LOC103636243), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI402970.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   ||||||||||*||||||||||||| targets:60   CAUCCAAACACCCUAGCUAAUAGU   83 Target Full Sequence	1.0	Sequence 1095 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235100.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   ||||||||||*||||||||||||| targets:60   CAUCCAAACACCCUAGCUAAUAGU   83 Target Full Sequence	1.0	Sequence 1095 from Patent EP2985353	NA	coding protein	psRNATarget
JB163431.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   ||||||||||*||||||||||||| targets:60   CAUCCAAACACCCUAGCUAAUAGU   83 Target Full Sequence	1.0	Sequence 1095 from Patent EP2559767	NA	coding protein	psRNATarget
BT066299.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   ||||||||||*=|||||||||||| targets:1245   CAUCCAAACACUCUAGCUAAUAGU   1268 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0189M13 mRNA, complete cds	NA	coding protein	psRNATarget
BT084681.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   ||||=|||||*||||||||||||| targets:389   CAUCUAAACAUCCUAGCUAAUAGU   412 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0157D18 mRNA, complete cds	NA	coding protein	psRNATarget
BT085123.2	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   |||=||||||*||||||||||||| targets:1136   CAUUCAAACAUCCUAGCUAAUAGU   1159 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0296D08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196102.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   |||=||||||*||||||||||||| targets:1136   CAUUCAAACAUCCUAGCUAAUAGU   1159 Target Full Sequence	1.0	Zea mays uncharacterized LOC100501358 (LOC100501358), mRNA	NA	coding protein	psRNATarget
HI403030.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   ||||||||||*|=||||||||||| targets:63   CAUCCAAACACCUUAGCUAAUAGU   86 Target Full Sequence	2.5	Sequence 1155 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235160.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   ||||||||||*|=||||||||||| targets:63   CAUCCAAACACCUUAGCUAAUAGU   86 Target Full Sequence	2.5	Sequence 1155 from Patent EP2985353	NA	coding protein	psRNATarget
JB163491.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   ||||||||||*|=||||||||||| targets:63   CAUCCAAACACCUUAGCUAAUAGU   86 Target Full Sequence	2.5	Sequence 1155 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240722.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   ||||||||||*|=||||||||||| targets:57   CAUCCAAACACCUUAGCUAAUAGU   80 Target Full Sequence	2.5	Sequence 6717 from Patent EP2985353	NA	coding protein	psRNATarget
JB169053.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   ||||||||||*|=||||||||||| targets:57   CAUCCAAACACCUUAGCUAAUAGU   80 Target Full Sequence	2.5	Sequence 6717 from Patent EP2559767	NA	coding protein	psRNATarget
HI408592.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   ||||||||||*|=||||||||||| targets:57   CAUCCAAACACCUUAGCUAAUAGU   80 Target Full Sequence	2.5	Sequence 6717 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020548642.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   *||=||||||*||||||||||||| targets:2153   GAUUCAAACACCCUAGCUAAUAGU   2176 Target Full Sequence	1.0	PREDICTED: Zea mays ubiquitin-like-specific protease ESD4 (LOC103647934), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669572.2	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   *||=||||||*||||||||||||| targets:2117   GAUUCAAACACCCUAGCUAAUAGU   2140 Target Full Sequence	1.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669570.2	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   *||=||||||*||||||||||||| targets:1907   GAUUCAAACACCCUAGCUAAUAGU   1930 Target Full Sequence	1.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547655.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   *||=||||||*||||||||||||| targets:1863   GAUUCAAACACCCUAGCUAAUAGU   1886 Target Full Sequence	1.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X4, mRNA	NA	coding protein	psRNATarget
NM_001152524.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   *||=||||||*||||||||||||| targets:2182   GAUUCAAACACCCUAGCUAAUAGU   2205 Target Full Sequence	1.0	Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), mRNA	NA	coding protein	psRNATarget
BT063004.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   *||=||||||*||||||||||||| targets:2182   GAUUCAAACACCCUAGCUAAUAGU   2205 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0016A10 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235137.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   ||||||||||*|*||||||||||| targets:59   CAUCCAAACACCAUAGCUAAUAGU   82 Target Full Sequence	2.5	Sequence 1132 from Patent EP2985353	NA	coding protein	psRNATarget
HI403007.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   ||||||||||*|*||||||||||| targets:59   CAUCCAAACACCAUAGCUAAUAGU   82 Target Full Sequence	2.5	Sequence 1132 from Patent EP2074227	NA	coding protein	psRNATarget
JB163468.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   ||||||||||*|*||||||||||| targets:59   CAUCCAAACACCAUAGCUAAUAGU   82 Target Full Sequence	2.5	Sequence 1132 from Patent EP2559767	NA	coding protein	psRNATarget
EZ086734.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   =||*||||||*||||||||||||| targets:18   UAUACAAACACCCUAGCUAAUAGU   41 Target Full Sequence	1.0	TSA: Zea mays contig22380, mRNA sequence	NA	coding protein	psRNATarget
XM_020541848.1	ncRNA:24   GUAGGUUUGUUGGAUCGAUUAUCA   1   =|||-|||||*=|||||||||||| targets:9145   UAUC-AAACACUCUAGCUAAUAGU   9167 Target Full Sequence	2.5	PREDICTED: Zea mays putative bZIP transcription factor superfamily protein (bZIP108), transcript variant X1, mRNA	NA	coding protein	psRNATarget