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BaseInfo

ncRNA ID	novel_zma_miR1066
Species	Zea mays
Class	miRNA
Genome position	Chr2:206345388-206345452 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - GGUUUGACUUUUGGCUUUGCCUUU - 24
Stem-loop(if miRNA)	--G   UG        C    -CC       CC    GUU  ACUUUUGG UUUG   UUUUGCU  A    |||  |||||||| ||||   |||||||  U    UAA  UGGGAACC AAAC   AAAACGA  A AAA   GU        -    UUA       AA
Stem-loop sequence	GGUUUGACUUUUGGCUUUGCCUUUUGCUCCAUAAAAGCAAAAAUUCAAACCAAGGGUUGAAUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ054115.1	ncRNA:24   UUUCCGUUUCGGUUUUCAGUUUGG   1   ||||*||||||||||||||||||| targets:82   AAAGCCAAAGCCAAAAGUCAAACC   105 Target Full Sequence	0.0	TSA: Zea mays contig55237, mRNA sequence	NA	coding protein	psRNATarget
NM_001152768.1	ncRNA:24   UUUCCGUUUCGGUUUUCAGUUUGG   1   ||||*||||||||||||||||||| targets:1099   AAAGCCAAAGCCAAAAGUCAAACC   1122 Target Full Sequence	0.0	Zea mays uncharacterized LOC100279813 (LOC100279813), mRNA	NA	coding protein	psRNATarget
BT054933.2	ncRNA:24   UUUCCGUUUCGGUUUUCAGUUUGG   1   ||||*||||||||||||||||||| targets:1099   AAAGCCAAAGCCAAAAGUCAAACC   1122 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0071E07 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550348.1	ncRNA:24   UUUCCGUUUCGGUUUUCAGUUUGG   1   ||||*||||||||||||||||||| targets:6   AAAGCCAAAGCCAAAAGUCAAACC   29 Target Full Sequence	0.0	PREDICTED: Zea mays coatomer subunit epsilon-1-like (LOC103650709), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI410124.1	ncRNA:24   UUUCCGUUU-CGGUUUUCAGUUUGG   1   ||||*||||-||||||||||||||| targets:39   AAAGCCAAAAGCCAAAAGUCAAACC   63 Target Full Sequence	2.0	Sequence 8249 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242254.1	ncRNA:24   UUUCCGUUU-CGGUUUUCAGUUUGG   1   ||||*||||-||||||||||||||| targets:39   AAAGCCAAAAGCCAAAAGUCAAACC   63 Target Full Sequence	2.0	Sequence 8249 from Patent EP2985353	NA	coding protein	psRNATarget
JB170585.1	ncRNA:24   UUUCCGUUU-CGGUUUUCAGUUUGG   1   ||||*||||-||||||||||||||| targets:39   AAAGCCAAAAGCCAAAAGUCAAACC   63 Target Full Sequence	2.0	Sequence 8249 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020537669.1	ncRNA:20   CGUUUCGGUUUUCAGUUUGG   1   **|||||||||||||||||| targets:1   CAAAAGCCAAAAGUCAAACC   20 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103626443 (LOC103626443), mRNA	NA	coding protein	psRNATarget
XM_008647387.1	ncRNA:24   UUUCCGUUUCGGUUUUCAGUUUGG   1   ******|||||||||||||||||| targets:1138   CCUCUAAAAGCCAAAAGUCAAACC   1161 Target Full Sequence	1.0	PREDICTED: Zea mays probable pectinesterase 56 (LOC103627040), mRNA	NA	coding protein	psRNATarget