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BaseInfo

ncRNA ID	novel_zma_miR1064
Species	Zea mays
Class	miRNA
Genome position	Chr4:141848203-141848330 [-]
Reference genome	RefGen_v4
Source	SRR2089710
Length	24
Mature sequence(if miRNA)	1 - GAGGUAGUGAACCAAACAGGCCAU - 24
Stem-loop(if miRNA)	--             UG G   AAAUG              U   GUUAGUCGUUCGAAUUGAA   GGCCUGUUUGGUU  U GCU     UGCCACACUUUGCC AAG                   U   |||||||||||||  | |||     |||||||||||||| |||   CCGGACAAACCAA  G UGG     ACGGUGUGAAACGG UUG                   A UA             GU A   AGUCA              A   AAAAGACAGAUUCCAAUCA
Stem-loop sequence	GGCCUGUUUGGUUUGUGGCUAAAUGUGCCACACUUUGCCUAAGGUUAGUCGUUCGAAUUGAAUAACUAACCUUAGACAGAAAAGUUAGGCAAAGUGUGGCAACUGAGGUAGUGAACCAAACAGGCCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT064583.1	ncRNA:24   UACCGGACAAACCAAGUGAUGGAG   1   *||||||||||||||||||||||| targets:1629   UUGGCCUGUUUGGUUCACUACCUC   1652 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0185L15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150092.1	ncRNA:24   UACCGGACAAACCAAGUGAUGGAG   1   *||||||||||||||||||||||| targets:1699   UUGGCCUGUUUGGUUCACUACCUC   1722 Target Full Sequence	0.0	Zea mays uncharacterized LOC100276261 (LOC100276261), mRNA	NA	coding protein	psRNATarget
EU960971.1	ncRNA:24   UACCGGACAAACCAAGUGAUGGAG   1   *||||||||||||||||||||||| targets:1699   UUGGCCUGUUUGGUUCACUACCUC   1722 Target Full Sequence	0.0	Zea mays clone 230073 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149469.1	ncRNA:24   UACCGGACAAACCAAGUGAUGGAG   1   |*|||||||||||||||||||||| targets:109   AGGGCCUGUUUGGUUCACUACCUC   132 Target Full Sequence	0.0	Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA	NA	coding protein	psRNATarget
EU955574.1	ncRNA:24   UACCGGACAAACCAAGUGAUGGAG   1   |*|||||||||||||||||||||| targets:109   AGGGCCUGUUUGGUUCACUACCUC   132 Target Full Sequence	0.0	Zea mays clone 1537438 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU945170.1	ncRNA:24   UACCGGACAAACCAAGUGAUGGAG   1   |*|||||||||||||||||=|||| targets:837   AGGGCCUGUUUGGUUCACUGCCUC   860 Target Full Sequence	1.5	Zea mays clone 243250 mRNA sequence	NA	coding protein	psRNATarget
EU966347.1	ncRNA:24   UACCGGACAAACCAAGUGAUGGAG   1   |*|||||||||||||||||=|||| targets:1321   AGGGCCUGUUUGGUUCACUGCCUC   1344 Target Full Sequence	1.5	Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
EU968686.1	ncRNA:24   UACCGGACAAACCAAGUGAUGGAG   1   |*||=||||||||||||||=|||* targets:605   AAGGUCUGUUUGGUUCACUGCCUA   628 Target Full Sequence	2.5	Zea mays clone 323451 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT065161.1	ncRNA:24   UACCGGACAAACCAAGUGAUGGAG   1   |*||=||||||||||||||=|||* targets:588   AAGGUCUGUUUGGUUCACUGCCUA   611 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550436.1	ncRNA:24   UACCGGACAAACCAAGUGAUGGAG   1   |*||=||||||||||||||=|||* targets:623   AAGGUCUGUUUGGUUCACUGCCUA   646 Target Full Sequence	2.5	PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA	NA	coding protein	psRNATarget
NM_001346844.1	ncRNA:24   UACCGGACAAACCAAGUGAUGGAG   1   |**||*|||||||||||||||||= targets:1479   AAAGCAUGUUUGGUUCACUACCUU   1502 Target Full Sequence	2.0	Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA	NA	coding protein	psRNATarget