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BaseInfo

ncRNA ID	novel_zma_miR1061
Species	Zea mays
Class	miRNA
Genome position	Chr4:33124851-33125076 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089713;SRR5451004;SRR2089703
Length	24
Mature sequence(if miRNA)	1 - ACAUAGAAGACUGGUGCACAUGGU - 24
Stem-loop(if miRNA)	--    A   G C                     U                        C        C      -AUUAUUCAA    CA  UA          C ACUACA   ACAU GAA A UGGUGCACAUGGUGCACAUAU AAAUCAUCACCACUCAUUUUAGAU UAACGUCU UAGUUG          UUUA  AA  ACACCUUCCA C      C   |||| ||| | ||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||          ||||  ||  |||||||||| |      A   UGUA CUU U ACCACGUGUACCACGUGUAUA UUUAGUAGUGGUGAGUAAAAUUUA AUUGCAGA AUCAAC          AAAU  UU  UGUGGGAGGU G      C CG    C   G A                     C                        A        U      AAACUAUAUA    AA  CC          U CACCAC
Stem-loop sequence	ACAUAGAAGACUGGUGCACAUGGUGCACAUAUUAAAUCAUCACCACUCAUUUUAGAUCUAACGUCUCUAGUUGAUUAUUCAAUUUACAAAUAACACCUUCCACCACUACACACCACCACGUUGGAGGGUGUCCUUAAUAAAAUAUAUCAAACAACUAUAGACGUUAAAUUUAAAAUGAGUGGUGAUGAUUUCAUAUGUGCACCAUGUGCACCAAUGUUCCAUGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552764.1	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |||||||*|||||||||||||||| targets:3118   ACCAUGUACACCAGUCUUCUAUGU   3141 Target Full Sequence	1.0	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681116.2	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |||||||*|||||||||||||||| targets:3296   ACCAUGUACACCAGUCUUCUAUGU   3319 Target Full Sequence	1.0	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163459.1	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |=|||||*|||||*|||||||||| targets:224   AUCAUGUACACCAAUCUUCUAUGU   247 Target Full Sequence	2.5	Sequence 1123 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235128.1	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |=|||||*|||||*|||||||||| targets:224   AUCAUGUACACCAAUCUUCUAUGU   247 Target Full Sequence	2.5	Sequence 1123 from Patent EP2985353	NA	coding protein	psRNATarget
HI402998.1	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |=|||||*|||||*|||||||||| targets:224   AUCAUGUACACCAAUCUUCUAUGU   247 Target Full Sequence	2.5	Sequence 1123 from Patent EP2074227	NA	coding protein	psRNATarget