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BaseInfo

ncRNA ID	novel_zma_miR1055
Species	Zea mays
Class	miRNA
Genome position	Chr4:171263200-171263362 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089715;SRR2089699;SRR2089707;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - CUUAUAUACUAGGACGGAGGGAGU - 24
Stem-loop(if miRNA)	--       A   C         U         G  -CUG    AAAAACUAAAAAAA    UCUAUAUUACUGCAUCAAUGUACGC   UCCCUCC UCC AGUAUAUAA GCAUAACCA CU    GUUC              UGUA                         A   ||||||| ||| ||||||||| ||||||||| ||    ||||              ||||                         U   AGGGAGG AGG UCAUAUAUU CGUAUUGGU GA    UAAG              GAGU                         G UG       C   A         C         -  AAAA    ----------AUCA    AUUAAAUUCCACACUAGAGAGAUCU
Stem-loop sequence	UCCCUCCAUCCCAGUAUAUAAUGCAUAACCAGCUCUGGUUCAAAAACUAAAAAAAUGUAUCUAUAUUACUGCAUCAAUGUACGCAUGUCUAGAGAGAUCACACCUUAAAUUAUGAGACUAGAAUAAAAAGUGGUUAUGCCUUAUAUACUAGGACGGAGGGAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU941116.1	ncRNA:24   UGAGGGAGGCAGGAUCAUAUAUUC   1   ||||||||||||||||*||||||| targets:558   ACUCCCUCCGUCCUAGGAUAUAAG   581 Target Full Sequence	1.5	Zea mays clone 1291101 mRNA sequence	NA	coding protein	psRNATarget
EU974289.1	ncRNA:24   UGAGGGAGGCAGGAUCAUAUAUUC   1   |||||||||||||*|||||||||| targets:194   ACUCCCUCCGUCCCAGUAUAUAAG   217 Target Full Sequence	1.5	Zea mays clone 445101 mRNA sequence	NA	coding protein	psRNATarget
XM_020546407.1	ncRNA:24   UGAGGGAGGCAGGAUCAUAUAUUC   1   |||||||=|||||*|||||||||| targets:779   ACUCCCUUCGUCCCAGUAUAUAAG   802 Target Full Sequence	2.5	PREDICTED: Zea mays zinc finger BED domain-containing protein DAYSLEEPER-like (LOC109943429), mRNA	NA	coding protein	psRNATarget
AY106001.1	ncRNA:24   UGAGGGAGGCAGGAUCAUAUAUUC   1   |*|||||||||=|||||||||||* targets:893   AAUCCCUCCGUUCUAGUAUAUAAA   916 Target Full Sequence	2.5	Zea mays PCO085514 mRNA sequence	NA	coding protein	psRNATarget