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BaseInfo

ncRNA ID	novel_zma_miR1054
Species	Zea mays
Class	miRNA
Genome position	Chr4:183701086-183701136 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089701
Length	24
Mature sequence(if miRNA)	28 - GGGGACGCUGCUGGAGACAGUCUU - 51
Stem-loop(if miRNA)	---G       U    GAGACAGUCU     GGGACGC GCUG          U     ||||||| ||||     CUCUGCG AUGU          A GUCA       C    CCGUCCGGGU
Stem-loop sequence	GGGGACGCUGCUGGAGACAGUCUUAUGGGCCUGCCUGUACGCGUCUCACUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ107270.1	ncRNA:24   UUCUGACAGAGGUCGUCGCAGGGG   1   *||=|||||||||||||||||||| targets:8   UAGGCUGUCUCCAGCAGCGUCCCC   31 Target Full Sequence	0.0	TSA: Zea mays contig42928, mRNA sequence	NA	coding protein	psRNATarget
BT067838.1	ncRNA:24   UUCUGACAGAGGUCGUCGCAGGGG   1   *||=|||||||||||||||||||| targets:552   UAGGCUGUCUCCAGCAGCGUCCCC   575 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0167G13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553398.1	ncRNA:24   UUCUGACAGAGGUCGUCGCAGGGG   1   |||==|||||||||||||||||=| targets:1510   AAGGUUGUCUCCAGCAGCGUCCUC   1533 Target Full Sequence	1.5	PREDICTED: Zea mays transmembrane 9 superfamily protein member 4 (LOC100285157), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008649073.2	ncRNA:24   UUCUGACAGAGGUCGUCGCAGGGG   1   *||=||||||||||||||||||=| targets:1778   UAGGCUGUCUCCAGCAGCGUCCUC   1801 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649072.2	ncRNA:24   UUCUGACAGAGGUCGUCGCAGGGG   1   *||=||||||||||||||||||=| targets:1877   UAGGCUGUCUCCAGCAGCGUCCUC   1900 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008681125.2	ncRNA:24   UUCUGACAGAGGUCGUCGCAGGGG   1   *|||||*||||||||||||||||| targets:2157   UAGACUCUCUCCAGCAGCGUCCCC   2180 Target Full Sequence	1.0	PREDICTED: Zea mays cytochrome P450 714C3-like (LOC103654294), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550176.1	ncRNA:24   UUCUGACAGAGGUCGUCGCAGGGG   1   *|||||*|||||||||*||||||| targets:901   UAGACUAUCUCCAGCAACGUCCCC   924 Target Full Sequence	2.5	PREDICTED: Zea mays small G protein signaling modulator 1 (LOC103649936), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EU952386.1	ncRNA:24   UUCUGACAGAGGUCGUCGCAGGGG   1   =|||*|||*|=||||||||||||* targets:969   GAGAAUGUAUUCAGCAGCGUCCCA   992 Target Full Sequence	3.0	Zea mays clone 1279207 mRNA sequence	NA	coding protein	psRNATarget
BT062133.1	ncRNA:24   UUCUGACAGAGGUCGUCGCAGGGG   1   =|||*|||*|=||||||||||||* targets:943   GAGAAUGUAUUCAGCAGCGUCCCA   966 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0217G04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174541.1	ncRNA:24   UUCUGACAGAGGUCGUCGCAGGGG   1   =|||*|||*|=||||||||||||* targets:943   GAGAAUGUAUUCAGCAGCGUCCCA   966 Target Full Sequence	3.0	Zea mays C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (pco064147), mRNA	NA	coding protein	psRNATarget
XM_008673578.2	ncRNA:24   UUCUGACAGAGGUCGUCGCAGGGG   1   *****|||||||||||*||||||| targets:50   UUCUGUGUCUCCAGCAACGUCCCC   73 Target Full Sequence	1.5	PREDICTED: Zea mays protein ALP1-like (LOC103649274), mRNA	NA	coding protein	psRNATarget