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BaseInfo

ncRNA ID	novel_zma_miR1052
Species	Zea mays
Class	miRNA
Genome position	Chr4:186266826-186266875 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089711;SRR2089713;SRR2089715;SRR2089706
Length	24
Mature sequence(if miRNA)	27 - GCCCACGGGCGCGGACUGUCCGGA - 50
Stem-loop(if miRNA)	--    AC    G     U     G   GCCC  GGGC CGGAC GUCCG A   ||||  |||| ||||| ||||| C   CGGG  UCCG GCCUG CAGGC C GC    AC    -     C     G
Stem-loop sequence	GCCCACGGGCGCGGACUGUCCGGACCGCGGACCGUCCGGCCUCAGGGCCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU949855.1	ncRNA:24   AGGCCUGUCAGGCGCGGGCACCCG   1   |||||||||||||||||=|||||| targets:410   UCCGGACAGUCCGCGCCUGUGGGC   433 Target Full Sequence	1.5	Zea mays clone 449025 mRNA sequence	NA	coding protein	psRNATarget
NM_001149438.1	ncRNA:24   AGGCCUGUCAGGCGCGGGCACCCG   1   |||||||||||||||||=|||||| targets:1919   UCCGGACAGUCCGCGCCUGUGGGC   1942 Target Full Sequence	1.5	Zea mays uncharacterized LOC100275341 (LOC100275341), mRNA	NA	coding protein	psRNATarget
EU955374.1	ncRNA:24   AGGCCUGUCAGGCGCGGGCACCCG   1   |||||||||||||||||=|||||| targets:1919   UCCGGACAGUCCGCGCCUGUGGGC   1942 Target Full Sequence	1.5	Zea mays clone 1529849 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658262.2	ncRNA:24   AGGCCUGUCAGGCGCGGGCACCCG   1   |||||||||||||||||=|||||| targets:2667   UCCGGACAGUCCGCGCCUGUGGGC   2690 Target Full Sequence	1.5	PREDICTED: Zea mays CASC3/Barentsz eIF4AIII binding (LOC103635880), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658263.2	ncRNA:24   AGGCCUGUCAGGCGCGGGCACCCG   1   |||||||||||||||||=|||||| targets:2768   UCCGGACAGUCCGCGCCUGUGGGC   2791 Target Full Sequence	1.5	PREDICTED: Zea mays CASC3/Barentsz eIF4AIII binding (LOC103635880), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU974386.1	ncRNA:24   AGGCCUGUCAGGCGCGGGCACCCG   1   |||||||=|||||||||=|||||| targets:844   UCCGGACGGUCCGCGCCUGUGGGC   867 Target Full Sequence	2.5	Zea mays clone 447822 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174686.1	ncRNA:24   AGGCCUGUCAGGCGCGGGCACCCG   1   |||||||=|||||||||=|||||| targets:1435   UCCGGACGGUCCGCGCCUGUGGGC   1458 Target Full Sequence	2.5	Zea mays Cysteine-rich receptor-like protein kinase 10 (LOC100381909), mRNA	NA	coding protein	psRNATarget
BT062568.1	ncRNA:24   AGGCCUGUCAGGCGCGGGCACCCG   1   |||||||=|||||||||=|||||| targets:1435   UCCGGACGGUCCGCGCCUGUGGGC   1458 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0315C08 mRNA, complete cds	NA	coding protein	psRNATarget
BT018646.1	ncRNA:24   AGGCCUGUCAGGCGCGGGCACCCG   1   |||||||=|||||||||=|||||| targets:1570   UCCGGACGGUCCGCGCCUGUGGGC   1593 Target Full Sequence	2.5	Zea mays clone EL01N0505C04.d mRNA sequence	NA	coding protein	psRNATarget
XM_008679932.1	ncRNA:24   AGGCCUGUCAGGCGCGGGCACCCG   1   ||||||||||=||||||=|||||| targets:1827   UCCGGACAGUUCGCGCCUGUGGGC   1850 Target Full Sequence	2.5	PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552482.1	ncRNA:24   AGGCCUGUCAGGCGCGGGCACCCG   1   ||||||||||=||||||=|||||| targets:1863   UCCGGACAGUUCGCGCCUGUGGGC   1886 Target Full Sequence	2.5	PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008679933.2	ncRNA:24   AGGCCUGUCAGGCGCGGGCACCCG   1   ||||||||||=||||||=|||||| targets:3657   UCCGGACAGUUCGCGCCUGUGGGC   3680 Target Full Sequence	2.5	PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU943239.1	ncRNA:24   AGGCCUGUCAGGCGCGGGCACCCG   1   |||*|||=|||||||||=|||||| targets:322   UCCAGACGGUCCGCGCCUGUGGGC   345 Target Full Sequence	2.5	Zea mays clone 1589479 mRNA sequence	NA	coding protein	psRNATarget