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BaseInfo

ncRNA ID osa-miR2118n
Species Oryza sativa
Class miRNA
Genome position Chr4:21661494-21661672 [-]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 39 - UUCCCGAUGCCUCCCAUUCCUA - 60
Stem-loop(if miRNA)       ---C             AAGAG  A  C       A            -A   -  AG       UAA             U      G
GUGAGC    AGGAAGAGGAAGA     AG GC UAAGAGC GUGGGAAUGGGA  CAU GG  GAAAGCC   AAACCAAAUUUCU CCUCCA C
||||||    |||||||||||||     || || ||||||| ||||||||||||  ||| ||  |||||||   ||||||||||||| ||||||
CGCUCG    UCCUUCUCCUUCU     UC CG AUUCUUG UAUCCUUACCCU  GUA CC  UUUUUGG   UUUGGUUUAAAGG GGAGGU A
      ACUU             -----  A  A       C            CC   G  CU       ---             U      A
Stem-loop sequence GUGAGCCAGGAAGAGGAAGAAAGAGAGAGCCUAAGAGCAGUGGGAAUGGGAACAUGGAGGAAAGCCUAAAAACCAAAUUUCUUCCUCCAGCAAUGGAGGUGGAAAUUUGGUUUGGUUUUUUCCCGAUGCCUCCCAUUCCUAUCGUUCUUAAGCACUUCUUCCUCUUCCUUUCAGCUCGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK068680.1
ncRNA:22   AUCCUUACCCUCCGUAGCCCUU   1
  |||||||||||||||||*||||
targets:352   UAGGAAUGGGAGGCAUCAGGAA   373

1.5 Oryza sativa Japonica Group cDNA clone:J013158G01, full insert sequence NA coding protein psRNATarget
AK100477.1
ncRNA:22   AUCCUUACCCUCCGUAGCCCUU   1
  *=||=||||||||||||||*||
targets:1963   AGGGGAUGGGAGGCAUCGGUAA   1984

2.5 Oryza sativa Japonica Group cDNA clone:J023094O16, full insert sequence NA coding protein psRNATarget
AB379816.1
ncRNA:22   AUCCUUACCCUCCGUAGCCCUU   1
  *=||=||||||||||||||*||
targets:841   AGGGGAUGGGAGGCAUCGGUAA   862

2.5 Oryza sativa Japonica Group Pit mRNA for NBS-LRR disease resistance protein, complete cds NA coding protein psRNATarget
XM_015789554.1
ncRNA:22   AUCCUUACCCUCCGUAGCCCUU   1
  *=||=||||||||||||||*||
targets:1075   AGGGGAUGGGAGGCAUCGGUAA   1096

2.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4324511), transcript variant X9, mRNA putative disease resistance protein RGA1(LOC4324511) coding protein psRNATarget
XM_015789545.1
ncRNA:22   AUCCUUACCCUCCGUAGCCCUU   1
  *=||=||||||||||||||*||
targets:1126   AGGGGAUGGGAGGCAUCGGUAA   1147

2.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4324511), transcript variant X8, mRNA putative disease resistance protein RGA1(LOC4324511) coding protein psRNATarget
XM_015789538.1
ncRNA:22   AUCCUUACCCUCCGUAGCCCUU   1
  *=||=||||||||||||||*||
targets:1132   AGGGGAUGGGAGGCAUCGGUAA   1153

2.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4324511), transcript variant X7, mRNA putative disease resistance protein RGA1(LOC4324511) coding protein psRNATarget
XM_015789487.1
ncRNA:22   AUCCUUACCCUCCGUAGCCCUU   1
  *=||=||||||||||||||*||
targets:1453   AGGGGAUGGGAGGCAUCGGUAA   1474

2.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC9270751), transcript variant X6, mRNA putative disease resistance protein RGA1(LOC9270751) coding protein psRNATarget
XM_015789455.1
ncRNA:22   AUCCUUACCCUCCGUAGCCCUU   1
  *=||=||||||||||||||*||
targets:1464   AGGGGAUGGGAGGCAUCGGUAA   1485

2.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC9270751), transcript variant X2, mRNA putative disease resistance protein RGA1(LOC9270751) coding protein psRNATarget
XM_015789535.1
ncRNA:22   AUCCUUACCCUCCGUAGCCCUU   1
  *=||=||||||||||||||*||
targets:1212   AGGGGAUGGGAGGCAUCGGUAA   1233

2.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4324511), transcript variant X6, mRNA putative disease resistance protein RGA1(LOC4324511) coding protein psRNATarget
XM_015789446.1
ncRNA:22   AUCCUUACCCUCCGUAGCCCUU   1
  *=||=||||||||||||||*||
targets:1493   AGGGGAUGGGAGGCAUCGGUAA   1514

2.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC9270751), transcript variant X1, mRNA putative disease resistance protein RGA1(LOC9270751) coding protein psRNATarget
XM_015789463.1
ncRNA:22   AUCCUUACCCUCCGUAGCCCUU   1
  *=||=||||||||||||||*||
targets:1507   AGGGGAUGGGAGGCAUCGGUAA   1528

2.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC9270751), transcript variant X3, mRNA putative disease resistance protein RGA1(LOC9270751) coding protein psRNATarget
XM_015789519.1
ncRNA:22   AUCCUUACCCUCCGUAGCCCUU   1
  *=||=||||||||||||||*||
targets:1241   AGGGGAUGGGAGGCAUCGGUAA   1262

2.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4324511), transcript variant X4, mRNA putative disease resistance protein RGA1(LOC4324511) coding protein psRNATarget
XM_015789527.1
ncRNA:22   AUCCUUACCCUCCGUAGCCCUU   1
  *=||=||||||||||||||*||
targets:1246   AGGGGAUGGGAGGCAUCGGUAA   1267

2.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4324511), transcript variant X5, mRNA putative disease resistance protein RGA1(LOC4324511) coding protein psRNATarget
AB379819.1
ncRNA:22   AUCCUUACCCUCCGUAGCCCUU   1
  *=||=||||||||||||||*||
targets:1539   AGGGGAUGGGAGGCAUCGGUAA   1560

2.5 Oryza sativa Japonica Group NBSt1 mRNA for putative NBS-LRR disease resistance protein, complete cds NA coding protein psRNATarget
XM_015789479.1
ncRNA:22   AUCCUUACCCUCCGUAGCCCUU   1
  *=||=||||||||||||||*||
targets:1566   AGGGGAUGGGAGGCAUCGGUAA   1587

2.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC9270751), transcript variant X5, mRNA putative disease resistance protein RGA1(LOC9270751) coding protein psRNATarget
XM_015789471.1
ncRNA:22   AUCCUUACCCUCCGUAGCCCUU   1
  *=||=||||||||||||||*||
targets:1617   AGGGGAUGGGAGGCAUCGGUAA   1638

2.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC9270751), transcript variant X4, mRNA putative disease resistance protein RGA1(LOC9270751) coding protein psRNATarget
XM_015789511.1
ncRNA:22   AUCCUUACCCUCCGUAGCCCUU   1
  *=||=||||||||||||||*||
targets:1520   AGGGGAUGGGAGGCAUCGGUAA   1541

2.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4324511), transcript variant X3, mRNA putative disease resistance protein RGA1(LOC4324511) coding protein psRNATarget
XM_015789502.1
ncRNA:22   AUCCUUACCCUCCGUAGCCCUU   1
  *=||=||||||||||||||*||
targets:1530   AGGGGAUGGGAGGCAUCGGUAA   1551

2.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4324511), transcript variant X2, mRNA putative disease resistance protein RGA1(LOC4324511) coding protein psRNATarget
XM_015789493.1
ncRNA:22   AUCCUUACCCUCCGUAGCCCUU   1
  *=||=||||||||||||||*||
targets:1536   AGGGGAUGGGAGGCAUCGGUAA   1557

2.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4324511), transcript variant X1, mRNA putative disease resistance protein RGA1(LOC4324511) coding protein psRNATarget
XM_015774502.1
ncRNA:22   AUCCUUACCCUCCGUAGCCCUU   1
  |=|*||||||||||||*|||||
targets:853   UGGCAAUGGGAGGCAUGGGGAA   874

2.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA3 (LOC9267165), mRNA putative disease resistance protein RGA3(LOC9267165) coding protein psRNATarget

Reference

1 PMID:19584097
"Clusters and superclusters of phased small RNAs in the developing inflorescence of rice";
Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH;
Genome Res. 19:1429-1440(2009).
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