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BaseInfo

ncRNA ID novel_zma_miR1049
Species Zea mays
Class miRNA
Genome position Chr2:200047509-200047582 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 1 - AUCUAAUUAUGGGUCGUGCCGUGC - 24
Stem-loop(if miRNA) --AU   A  A              CCA  A  U   CC
    CUA UU UGGGUCGUGCCGUG   GC CG AUG  C
    ||| || ||||||||||||||   || || |||
    GAU AA ACCCGGUACGGCAC   CG GC UAC  A
UAUU   C  C              --C  -  -   UG
Stem-loop sequence AUCUAAUUAUGGGUCGUGCCGUGCCAGCACGUAUGCCCAGUCAUCGGCCCACGGCAUGGCCCACAACUAGUUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020547541.1
ncRNA:24   CGUGCCGUGCUGGGUAUUAAUCUA   1
  ||||||||||=|||||||||||||
targets:3390   GCACGGCACGGCCCAUAAUUAGAU   3413

1.0 PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA NA coding protein psRNATarget