Search result

BaseInfo

ncRNA ID	novel_zma_miR1045
Species	Zea mays
Class	miRNA
Genome position	Chr4:206006036-206006170 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089711;SRR2089713;SRR2287159;SRR2287162;SRR5451004;SRR5451005;SRR2089698;SRR2089700;SRR2089701;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - UUUUCGGACACUCAGCAAAGACUU - 24
Stem-loop(if miRNA)	--C                C   ----    C        -      --U  -  UCGGCAAAGGCUUUGU    UCUUUGUUGAGUGUCU AAA    CACU GGCAAAGA CCUUUU   GC AC                C    |||||||||||||||| |||    |||| |||||||| ||||||   || ||                A    AGAAACGACUCACAGG UUU    GUGA CUGUUUCU GGGAAA   CU UU                A UUC                C   UUUA    A        U      UGA  A  UUAUAAACAGCUCGUG
Stem-loop sequence	CUCUUUGUUGAGUGUCUCAAACACUCGGCAAAGACCUUUUUGCACUCGGCAAAGGCUUUGUCAAGUGCUCGACAAAUAUUUUAUCAGUAAAGGGUUCUUUGUCAAGUGAUUUUUUCGGACACUCAGCAAAGACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT055423.1	ncRNA:24   UUCAGAAACGACUCACAGGCUUUU   1   |**|||||||*|||||*||||||| targets:143   ACUUCUUUGCCGAGUGCCCGAAAA   166 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165647.1	ncRNA:24   UUCAGAAACGACUCACAGGCUUUU   1   |**|||||||*|||||*||||||| targets:143   ACUUCUUUGCCGAGUGCCCGAAAA   166 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   UUCAGAAACGACUCACAGGCUUUU   1   |**|||||||*|||||*||||||| targets:2162   ACUUCUUUGCCGAGUGCCCGAAAA   2185 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   UUCAGAAACGACUCACAGGCUUUU   1   |**|||||||*|||||*||||||| targets:2162   ACUUCUUUGCCGAGUGCCCGAAAA   2185 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
XM_008680068.2	ncRNA:24   UUCAGAAACGACUCACAGGCUUUU   1   |**|||||||*||||||||||=|| targets:127   ACCUCUUUGCCGAGUGUCCGAGAA   150 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103653106 (LOC103653106), mRNA	NA	coding protein	psRNATarget