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BaseInfo

ncRNA ID	ath-miRf10018-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	23
Mature sequence(if miRNA)	NA - UACUCGACCUGGGGGUCGAGUGG - NA
Stem-loop(if miRNA)	U   -               G    -  U  G    AG    -------GG      A  GG AUGAAGACACUCGACCUCGGGGUCGAGUGAUGUGAUUG GG GAU ACUCGACUUCCAGGU GAGU GA GA GUCG  UAGU         UCUGGC AU  G                                      A || ||| ||||||||||||||| |||| || || ||||  ||||         |||||| ||  |                                      G UC CUG UGAGCUGGGGGUCCA CUCA CU CU UAGU  GUUA         GUGAGC UG  G                                      U   U   G               G    U  U  G    -G    AGUGGAGUG      -  -- UGGUCCAGCUCACAGAAGUAGAGGUAGAGGACUGGUGG
Stem-loop sequence	GGUGAUACUCGACUUCCAGGUGGAGUGAUGAGGUCGAGUAGUGGUCUGGCAAUGGGAUGAAGACACUCGACCUCGGGGUCGAGUGAUGUGAUUGAGUGGUGGUCAGGAGAUGGAGAUGAAGACACUCGACCUGGUGGUCGAGUGGUGAGGUGAAUUGGUGAUGUCUUCUACUCGACCUGGGGGUCGAGUGGUCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_103391.1	ncRNA:23   GGUGAGCUGGGGGUCCAGCUCAU   1   ||||||||||||||||||||||| targets:1104   CCACUCGACCCCCAGGUCGAGUA   1126 Target Full Sequence	0.0	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT025674.1	ncRNA:23   GGUGAGCUGGGGGUCCAGCUCAU   1   |=||||||||||||||||||||| targets:187   CUACUCGACCCCCAGGUCGAGUA   209 Target Full Sequence	0.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT014714.1	ncRNA:23   GGUGAGCUGGGGGUCCAGCUCAU   1   *=||||||||||||||||||||= targets:136   AUACUCGACCCCCAGGUCGAGUG   158 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:23   GGUGAGCUGGGGGUCCAGCUCAU   1   *=||||||||||||||||||||= targets:136   AUACUCGACCCCCAGGUCGAGUG   158 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:23   GGUGAGCUGGGGGUCCAGCUCAU   1   ==|||||||||||*||||||||| targets:308   UUACUCGACCCCCUGGUCGAGUA   330 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:23   GGUGAGCUGGGGGUCCAGCUCAU   1   |||||||||||||*||||||||| targets:90   CCACUCGACCCCCUGGUCGAGUA   112 Target Full Sequence	1.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:23   GGUGAGCUGGGGGUCCAGCUCAU   1   |||||||||||||*||||||||| targets:230   CCACUCGACCCCCUGGUCGAGUA   252 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:23   GGUGAGCUGGGGGUCCAGCUCAU   1   |=|||||||||||*||||||||| targets:181   CUACUCGACCCCCUGGUCGAGUA   203 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:23   GGUGAGCUGGGGGUCCAGCUCAU   1   |||||||||||||*||||||||| targets:230   CCACUCGACCCCCUGGUCGAGUA   252 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:23   GGUGAGCUGGGGGUCCAGCUCAU   1   |=|||||||||||*||||||||| targets:181   CUACUCGACCCCCUGGUCGAGUA   203 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
EF183194.1	ncRNA:23   GGUGAGCUGGGGGUCCAGCUCAU   1   ||||||||||*|||||||||||| targets:449   CCACUCGACCACCAGGUCGAGUA   471 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:23   GGUGAGCUGGGGGUCCAGCUCAU   1   |||||||||||||*||||||||| targets:124   CCACUCGACCCCCUGGUCGAGUA   146 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:23   GGUGAGCUGGGGGUCCAGCUCAU   1   |||||||||||||*||||||||| targets:499   CCACUCGACCCCCUGGUCGAGUA   521 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:23   GGUGAGCUGGGGGUCCAGCUCAU   1   |||||||||||||*||||||||| targets:499   CCACUCGACCCCCUGGUCGAGUA   521 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:23   GGUGAGCUGGGGGUCCAGCUCAU   1   =||||||||||||*||||||||| targets:1571   UCACUCGACCCCCUGGUCGAGUA   1593 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:23   GGUGAGCUGGGGGUCCAGCUCAU   1   ==||||*||||||*||||||||| targets:301   UUACUCAACCCCCUGGUCGAGUA   323 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:23   GGUGAGCUGGGGGUCCAGCUCAU   1   ==||||*||||||*||||||||| targets:301   UUACUCAACCCCCUGGUCGAGUA   323 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:23   GGUGAGCUGGGGGUCCAGCUCAU   1   ||||||||||||*|||||||||= targets:854   CCACUCGACCCCGAGGUCGAGUG   876 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
AY227642.1	ncRNA:23   GGUGAGCUGGGGGUCCAGCUCAU   1   |||||||||**|||||||||||| targets:808   CCACUCGACAACCAGGUCGAGUA   830 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:23   GGUGAGCUGGGGGUCCAGCUCAU   1   =|||||||||||*|||||||||= targets:1617   UCACUCGACCCCGAGGUCGAGUG   1639 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:23   GGUGAGCUGGGGGUCCAGCUCAU   1   ==||*||||||||*||||||||| targets:583   UUACYCGACCCCCUGGUCGAGUA   605 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget