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BaseInfo

ncRNA ID	novel_zma_miR1027
Species	Zea mays
Class	miRNA
Genome position	Chr5:154185454-154185595 [+]
Reference genome	RefGen_v4
Source	SRR1583941
Length	24
Mature sequence(if miRNA)	119 - GUGUGUCUUACCAUAUUCAUUGUA - 142
Stem-loop(if miRNA)	--  UUA                       U     CC    A  C                --      AU   CA   AAUAUGGUAAGACACAUGUUUUA ACAUG  CACU UA UAUGUUGUGUUUUAGU  UGUCUU  A   ||   ||||||||||||||||||||||| |||||  |||| || ||||||||||||||||  ||||||  C   GU   UUAUACCAUUCUGUGUGCAAAAU UGUAC  GUGA AU AUACAACACAAAAUCA  ACAGAA  A AU  UAC                       C     -A    C  A                AC      CA
Stem-loop sequence	CAUUAAAUAUGGUAAGACACAUGUUUUAUACAUGCCCACUAUACUAUGUUGUGUUUUAGUUGUCUUAUACAACAAGACACAACUAAAACACAACAUAAUACAGUGACAUGUCUAAAACGUGUGUCUUACCAUAUUCAUUGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU945043.1	ncRNA:24   AUGUUACUUAUACCAUUCUGUGUG   1   ||||||||||||*||||||||||= targets:1103   UACAAUGAAUAUCGUAAGACACAU   1126 Target Full Sequence	2.5	Zea mays clone 239070 mRNA sequence	NA	coding protein	psRNATarget
AY103603.1	ncRNA:24   AUGUUACUUAUACCAUUCUGUGUG   1   ||||||*||||||||||||||||= targets:872   UACAAUUAAUAUGGUAAGACACAU   895 Target Full Sequence	2.0	Zea mays PCO094169 mRNA sequence	NA	coding protein	psRNATarget
BT038516.1	ncRNA:24   AUGUUACUUAUACCAUUCUGUGUG   1   ||||||||||||*||||||||||= targets:45   UACAAUGAAUAUCGUAAGACACAU   68 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0282J19 mRNA, complete cds	NA	coding protein	psRNATarget
BT085431.2	ncRNA:24   AUGUUACUUAUACCAUUCUGUGUG   1   ||||||*||||||||||||||||= targets:536   UACAAUAAAUAUGGUAAGACACAU   559 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0012F15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539225.1	ncRNA:24   AUGUUACUUAUACCAUUCUGUGUG   1   ||=|||||||||*||||||||||= targets:455   UAUAAUGAAUAUCGUAAGACACAU   478 Target Full Sequence	2.5	PREDICTED: Zea mays probable histidine kinase 2 (LOC109940133), mRNA	NA	coding protein	psRNATarget
EU957875.1	ncRNA:24   AUGUUACUUAUACCAUUCUGUGUG   1   |==|||||||||*||||||||||* targets:1845   UGUAAUGAAUAUAGUAAGACACAA   1868 Target Full Sequence	2.5	Zea mays clone 1628466 taxane 13-alpha-hydroxylase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154694.1	ncRNA:24   AUGUUACUUAUACCAUUCUGUGUG   1   |==|||||||||*||||||||||* targets:1845   UGUAAUGAAUAUAGUAAGACACAA   1868 Target Full Sequence	2.5	Zea mays taxane 13-alpha-hydroxylase (LOC100281774), mRNA	NA	coding protein	psRNATarget